Table 1.
Genes Upregulated in Embryonic Mouse Lung vs Trachea
| GenBank Accession #
|
Fold Change
|
Symbol
|
Gene
|
|---|---|---|---|
| Transcription Factors | |||
| NM_008269 | 6.0 | Hoxb6 | Homeobox B6 |
| NM_010426 | 2.5 | FoxF1a | Forkhead box F1a |
| NM_009538 like 1 | 2.1 | Plagl1 | Pleiomorphic adenoma gene |
| NM_010703 factor 1 | 2.1 | Lef1 | Lymphoid enhancer binding |
| NM_011415 | 2.1 | Snai2 | Snail homolog 2 |
| NM_009331 | 1.8 | Tcf7 | Transcription factor 7 |
| NM_008584 | 1.5 | Meox2 | Mesenchyme homeobox 2 |
| Development | |||
| NM_009152 | 4.2 | Sema3a | Semaphorin 3a |
| NM_010025 | 3.2 | Dcx | Doublecortin |
| NM_008957 | 2.2 | Ptch1 | Patched homolog 1 |
| NM_053089 gene 1 | 2.1 | Narg1 | NMDA receptor regulated |
| NM_009510 | 2.1 | Vil2 | Villin 2 |
| NM_010060 Chain 11 | 1.7 | Dnahc11 | Dynein, axonemal, heavy |
| NM_011199 1 | 1.6 | Pthr1 | Parathyroid hormone receptor |
| NM_007555 5 | 1.6 | Bmp5 | Bone morphogenetic protein |
| Cell Adhesion | |||
| NM_019934 1 | 12.9 | Mia1 | Melanoma inhibitory activity |
| NM_008485 | 3.0 | Lamc2 | Laminin, gamma 2 |
| NM_009902 | 2.2 | Cldn3 | Claudin 3 |
| AF041409 | 2.0 | Itga8 | Integrin alpha 8 |
| NM_018777 | 1.9 | Cldn6 | Claudin 6 |
| Signal Transduction | |||
| NM_010305 protein | 2.0 | Gnai1 | Guanine nucleotide binding |
| NM_053272 reductase | 2.0 | Dhcr24 | 24-dehydrocholesterol |
| NM_011945 kinase | 1.7 | Map3k1 | Mitogen activated protein |
| NM_133235 | 1.7 | Khdrbs2 | kinase kinase 1 KH domain containing, RNA binding, signal transduction Associated 2 |
| NM_010579 protein | 1.5 | Itgb4bp | Integrin beta 4 binding |
| Protein Metabolism | |||
| NM_009183 neuraminide | 2.4 | St8sia4 | ST8 alpha-N-acetyl-alpha-2,8-sialyltransferase 4 |
| NM_025553 protein L11 | 2.4 | Mrpl11 | Mitochondrial ribosomal |
| NM_029352 9 | 2.2 | Dusp9 | Dual specificity phosphatase |
| NM_152804 (Drosophila) | 1.9 | Plk2 | Polo-like kinase 2 |
| NM_026130 receptor | 1.9 | Srpr | Signal recognition particle |
| NM_025338 protein 1 | 1.7 | Aurkaip1 | Aurora kinase A interacting |
| NM_026332 | 1.6 | Dnajc19 | DnaJ homolog, subfamily C, Member 19 |
| DNA/RNA Metabolism | |||
| NM_009104 | 2.0 | Rrm2 | Ribonucleotide reductase M2 |
| NM_010931 PHD and | 1.9 | Uhrf1 | Ubiquitin-like, containing |
| NM_019870 homolog | 1.5 | Ard1 | RING finger domains, 1 N-acetyltransferase ARD1 |
| NM_138586 | 1.5 | Exosc5 | Exosome component 5 |
| Other Proteins | |||
| NM_013492 | 8.7 | Clu | Clusterin |
| NM_011359 C | 5.9 | Sftpc | Surfactant associated protein |
| NM_021301 member 2 | 2.9 | Slc15a2 | Solute carrier family 15, |
| NM_008471 | 2.4 | Krt19 | Keratin 19 |
| NM_013820 | 2.2 | Hk2 | Hexokinase 2 |
| NM_010284 | 2.0 | Ghr | Growth hormone receptor |
| NM_026323 domain 2 | 1.9 | Wfdc2 | WAP four-disulfide core |
| NM_133706 | 1.9 | Temem97 | Transmembrane protein 97 |
| NM_010390 region 1 | 1.6 | H2-Q1 | Histocompatibility 2, Q |
| NM_009171 hydroxymethyltransferase 1 | 1.6 | Shmt1 | Serine |
| NM_016737 phosphoprotein 1 | 1.6 | Stip1 | Stress-induced |
| NM_177420 aminotransferase 1 | 1.5 | Psat1 | Phosphoserine |
| ESTs | |||
| BB645708 | 2.3 | B430320C24 | |
| AK008780 | 1.9 | 2210039B01Rik | |
| NM_026063 | 1.5 | 2900010M23Rik | |