Table 4.
Cross-comparison of the overall performance of 3D-PSSM and FUGUE
| FUGUE 3D-PSSM | GTF A | GTF B | Othera | Not Identifiedb |
| GTF A | 54 (2566) | 0 (0) | 1 (3) | 4 (31) |
| GTF B | 1 (1) | 31 (1043) | 1 (2) | 5 (11) |
| Other | 0 (0) | 1 (1) | 3 (30) | 1 (7) |
| Not identified | 9 (20) | 33 (69) | 4 (39) | 114 (1365) |
Figures outside parentheses relate to clusters of GTF sequences. Figures in parentheses relate to sequences.
a The folds other than GTF A/B.
b The top hit from fold recognition is low-confidence, i.e. the top hit from 3D-PSSM with E-val3D-PSSM > 0.05 or the top hit from FUGUE with ZFUGUE < 6.0.