Table 6.
RNase A complex | 2′,5′-ADP | 3′,5′-ADP | 5′-ADP | U-2′-p | U-3′-p |
Resolution (Å) | 30–1.2 | 30–1.5 | 30–1.2 | 30–1.5 | 30–1.5 |
(Outermost shell) (Å) | 1.22–1.20 | 1.55–1.50 | 1.22–1.20 | 1.55–1.50 | 1.55–1.50 |
Reflections measured | 949,552 | 423,949 | 623,242 | 278,544 | 239,794 |
Unique reflections | 67,242 | 36,948 | 70,118 | 37,206 | 37,930 |
Rsymma | 0.038 | 0.062 | 0.053 | 0.052 | 0.061 |
(Outermost shell) | 0.226 | 0.369 | 0.130 | 0.390 | 0.294 |
Completeness (outermost shell) (%) | 92.9 | 97.9 | 96.5 | 98.3 | 99.4 |
71.2 | 95.5 | 96.9 | 95.6 | 99.6 | |
<I/σI> (outermost shell) | 30.9 (10.8) | 15.1 (3.6) | 20.9 (5.8) | 14.1 (2.5) | 15.4 (2.6) |
Rcrystb | 0.194 | 0.229 | 0.190 | 0.211 | 0.220 |
(Outermost shell) | 0.261 | 0.446 | 0.195 | 0.442 | 0.412 |
Rfreec | 0.228 | 0.271 | 0.219 | 0.24 | 0.240 |
(Outermost shell) | 0.277 | 0.452 | 0.202 | 0.446 | 0.436 |
Number of solvent molecules | 558 | 389 | 540 | 399 | 415 |
R.m.s. deviation from ideality | |||||
in bond lengths (Å) | 0.011 | 0.004 | 0.011 | 0.004 | 0.004 |
in angles (°) | 1.7 | 1.2 | 1.8 | 1.3 | 1.3 |
Average B factor | |||||
Protein atoms (Å2) (molecule I/molecule II) | 18.6/16.7 | 18.8/23.6 | 18.2/17.7 | 19.0/18.7 | 19.0/20.2 |
Solvent molecules (Å2) | 30.9 | 33.0 | 33.1 | 30.7 | 30.8 |
Ligand atoms (Å2) (molecule I/molecule II) | 17.8/31.1 | 22.4/34.4 | 13.6/21.3 | 18.0/30.6 | 19.9/26.8 |
aRsymm = ∑h∑i│I(h) − Ii(h)/∑h∑iIi(h) where Ii(h) and I(h) are the ith and the mean measurements of the intensity of reflection h.
bRcryst = ∑h│Fo − Fc│/∑hFo, where Fo and Fc are the observed and calculated structure factors amplitudes of reflection h, respectively.
cRfree is equal to Rcryst for a randomly selected 5% subset of reflections not used in the refinement (Brünger 1992).