Table 2.

Simulation results

	Missing patterns	Chromosome 15 (type I error: SNP15_55)				Chromosome 6 (power: SNP6_150)
Model	(Pf11, Pf12, Pf22)(Pm11, Pm12, Pm22)(Po11, Po12, Po22)	TDT	1-TDT	HRR	EM-HRR	TDT	1-TDT	HRR	EM-HRR
1	(0.2,0.2,0.2) (0.2,0.2,0.2) (0.2,0.2,0.2)	5.3	4.8	5.2	4.5	21.5	25.7	22.6	27.9
2	(0.4,0.2,0.2) (0.4,0.2,0.2) (0.1,0.1,0.1)	4.7	16.5	5.8	19.7	21	67.1	22.3	73.9
2	(0.4,0.4,0.2) (0.4,0.4,0.2) (0.1,0.1,0.1)	5.8	14.3	4.4	12	13.8	43.7	11.9	42
2	(0.4,0.3,0.2) (0.4,0.3,0.2) (0.1,0.1,0.1)	5.1	14.4	4.5	16.2	15.9	58	15.7	60.7
2	(0.2,0.2,0.4) (0.2,0.2,0.4) (0.1,0.1,0.1)	4.3	5.1	4.6	6.2	20.1	20.9	21.5	20.7
2	(0.2,0.4,0.4) (0.2,0.4,0.4) (0.1,0.1,0.1)	4.5	6.4	4.1	8.9	15.4	7.7	12.9	5
2	(0.2,0.3,0.4) (0.2,0.3,0.4) (0.1,0.1,0.1)	5.1	6.9	5.3	8.6	17.3	12.6	16.4	10.9
3	(0.4,0.2,0.2) (0.4,0.2,0.2) (0.4,0.2,0.2)	9.5	3.6	10.8	5.5	4.9	21.7	5.5	27.4
3	(0.4,0.4,0.2) (0.4,0.4,0.2) (0.4,0.4,0.2)	9.6	4.2	8.5	4.7	7.9	20.2	7	19.7
3	(0.4,0.3,0.2) (0.4,0.3,0.2) (0.4,0.3,0.2)	8.6	3.4	8.6	4.4	6	18.6	6.1	22.1
3	(0.2,0.2,0.4) (0.2,0.2,0.4) (0.2,0.2,0.4)	10	5.4	11.9	7	34.1	24.8	36.8	29.9
3	(0.2,0.4,0.4) (0.2,0.4,0.4) (0.2,0.4,0.4)	13.5	4.7	12.2	5	41.7	22.2	39.5	23.1
3	(0.2,0.3,0.4) (0.2,0.3,0.4) (0.2,0.3,0.4)	11.5	3.8	11.6	3.6	40.1	23.5	39.7	26.4