Table 2.
Marked changes in linkage when sex was included as a covariate
| SNPa | Trait | LOD scores | ||||
| Rs no. | Location Chr:Mb | Gene | Location Chr:Mb | Without sex | With sex | Change when sex included |
| rs1515504 | 6:11.1 | SMCY | Y:20.3 | 0.00 | 4.68 | 4.68 |
| rs1885567 | 20:16.6 | DDX3Y | Y:13.5 | 0.02 | 4.12 | 4.11 |
| rs1861606 | 12:22.3 | SMC1L1 | X:53.4 | 0.83 | 4.43 | 3.60 |
| rs239345 | 16:23.3 | UTY | Y:14.0 | 0.11 | 3.69 | 3.57 |
| rs216896 | 12:6.0 | STS | X:7.2 | 0.17 | 3.75 | 3.57 |
| rs1959305 | 15:26.1 | EIF1AX | X:20.1 | 0.06 | 3.63 | 3.57 |
| rs540224 | 3:39.0 | EIF1AY | Y:21.2 | 0.03 | 3.58 | 3.55 |
| rs411602 | 18:6.1 | EIF1AY | Y:21.2 | 0.00 | 3.49 | 3.49 |
| rs2027871 | 20:42.6 | DDX3Y | Y:13.5 | 0.00 | 3.43 | 3.43 |
| rs1933121 | 14:37.4 | EIF1AY | Y:21.2 | 0.29 | 3.66 | 3.37 |
| rs1884910 | 20:54.5 | XIST | X:13.2 | 5.55 | 1.03 | -4.52 |
| rs739495 | 19:40.4 | USP9Y | Y:13.4 | 4.76 | 0.36 | -4.41 |
| rs1892687 | 21:35.2 | SMCY | Y:20.3 | 4.40 | 0.00 | -4.40 |
| rs1979797 | 7:32.6 | XIST | X:13.2 | 4.82 | 0.43 | -4.39 |
| rs983740 | 10:20.8 | DDX3Y | Y:13.5 | 4.95 | 0.60 | -4.35 |
| rs1055403 | 7:30.7 | EIF1AY | Y:21.2 | 4.46 | 0.15 | -4.30 |
| rs715257 | 10:13.2 | DDX3Y | Y:13.5 | 4.16 | 0.00 | -4.16 |
| rs983740 | 10:20.8 | EIF1AY | Y:21.2 | 4.25 | 0.16 | -4.09 |
| rs715257 | 10:13.2 | EIF1AY | Y:21.2 | 4.07 | 0.00 | -4.07 |
| rs1364161 | 17:2.1 | DDX3Y | Y:13.5 | 4.14 | 0.09 | -4.05 |
aThe 10 top SNPs and traits for which there is evidence for linkage when sex either included or excluded as a covariate are shown as examples.