Table 2.

Single-SNP association results^a

	LRAP		HLA-DRB2		CPNE1		AA827892		CSTB
	Nb	min(p)c	N	min(p)	N	min(p)	N	min(p)	N	min(p)
All SNPs	72	8.0 × 10-11	52	3.4 × 10-11	44	1.3 × 10-7	16	1.5 × 10-5	26	6.5 × 10-6
ldSelect	9	3.6 × 10-7	28	3.4 × 10-11	3	1.3 × 10-7	3	3.7 × 10-5	9	5.4 × 10-5
TagSNPs-Rspair	10	1.3 × 10-7	20	1.8 × 10-5	3	1.3 × 10-7	4	1.5 × 10-5	9	5.4 × 10-5
TagSNPs-Rspair-trios	10	1.3 × 10-7	20	1.8 × 10-5	3	1.3 × 10-7	4	1.5 × 10-5	9	6.5 × 10-6
Tagger-pairwise	9	2.2 × 10-8	26	1.2 × 10-8	3	1.2 × 10-5	3	3.7 × 10-5	9	4.8 × 10-5
TagSNPs-Rs	5	1.1 × 10-8	9	3.4 × 10-11	2	3.2 × 10-2	3	5.9 × 10-2	4	9.9 × 10-3
TagSNPs-Rs-trios	5	1.1 × 10-8	9	1.4 × 10-5	2	2.9 × 10-2	3	5.9 × 10-2	4	9.9 × 10-3
Tagger-multimarker	7	3.6 × 10-7	18	3.4 × 10-11	3	1.3 × 10-7	3	3.7 × 10-5	9	4.8 × 10-5
TagSNPs-Rh	7	2.8 × 10-9	9	3.8 × 10-7	2	1.2 × 10-5	3	1.5 × 10-5	4	9.9 × 10-3
TagSNPs-Rh-trios	6	3.6 × 10-7	8	5.1 × 10-5	2	1.2 × 10-5	3	1.5 × 10-5	4	1.5 × 10-2

^aSubset methods sorted into pairwise, multimarker, and haplotype-based methods.

^bN, number of SNPs.

^cBold, <0.01.