Table 2.

Maximum TLOD and HLOD scores

	Chromosome 6				Chromosome 21
	MCLINK		Merlin		MCLINK		Merlin
	Maximum TLOD	position	Maximum HLOD	position	Maximum TLOD	position	Maximum HLOD	position
Complete SNP set	16.95	28.96	16.40	28.96	11.75	37.44	11.31	37.46
PCA-Haplotype	16.07	28.96	15.61	28.96	1.09	37.38	1.30	37.38
PCA-Genotype	11.52	28.96	11.35	28.96	0.98	36.01	1.25	36.01
SNPLINK	14.65	28.96	14.18	33.0	0.83	37.38	0.98	36.01
	Maximum TLOD		position		Maximum TLOD		position
McLink-LD	9.07		38.61		1.17		38.16