Table 1.
Evaluation of the mapping of 200 UniProtKB/Swiss-Prot disease lines (173 with a reference to OMIM)
Exact match | Partial match | Total | |||||||
Retrieval | Recall | Precision | Retrieval | Recall | Precision | Retrieval | Recall | Precision | |
SP | 35(17.5%) | 35(17.5%) | 100.0% | 91(45.5%) | 73(36.5%) | 80.0% | 126(63%) | 108(54%) | 86.0% |
OMIM | 43(21.5%) | 40(20%) | 93.0% | 84(42%) | 68(34%) | 81.0% | 127(63.5%) | 108(54%) | 85.0% |
SP ∩ OMIM | 23(11.5%) | 23(11.5%) | 100.0% | 58(29%) | 51(25.5%) | 88.0% | 93(46.5%) | 86(43%) | 92.5% |
SP ∪ OMIM | 54(27%) | 52(26%) | 96.5% | 95(47.5%) | 76(38%) | 80.0% | 149(74.5%) | 128(64%) | 86.0% |
SP: UniProtKB/Swiss-Prot
SP ∩ OMIM: both mappings correspond to the same MeSH descriptor.