Table 2.

Previously identified mammalian and viral BPSs

Species	Gene	Intron	BPS	Position	Predicted BPa	BPS Scorea	Reference
H. sapiens	CALCA	4	CACTCAC	−36b	−36A	3.85	(42)
H. sapiens	CALCA	3	TACTGTC	−23b	−42A	2.60	(21)
H. sapiens	CALCA	3	GTACTGT	−24b	−42A	2.60	(21)
H. sapiens	CALCA	3	GGTGCAT	−32b	−42A	2.60	(21)
H. sapiens	CSH1	1	CCTCCAT	−23b	−23A	2.75	(22)
H. sapiens	DQB1	3	CACAGAC	−21c	−21A	3.25	(17)
H. sapiens	GH1	1	CTCTGTT	−22b	na	na	(22)
H. sapiens	GH1	1	GGCTCCC	−28b	na	na	(22)
H. sapiens	GH1	1	TGCTCTC	−36b	na	na	(22)
H. sapiens	GH1	4	GCCTCTC	−24b	−37A	2.80	(22)
H. sapiens	GH1	4	ACCCAAG	−37b	−37A	2.80	(22)
H. sapiens	GH1	4	TACCCAA	−38b	−37A	2.80	(22)
H. sapiens	HBA	1	CCCTCAC	−19b	−37A	3.25	(25)
H. sapiens	HBA	2	CACTGAC	−18b	−18A	3.95	(25)
H. sapiens	HBB	1	CACTGAC	−37b	−37A	3.95	(25)
H. sapiens	HBE1	1	CTCTAAT	−31b	−31A	3.45	(25)
H. sapiens	HBG1	1	TTCTGAC	−30b	−30A	3.85	(25)
H. sapiens	MYH10	5	TGCTAAC	−31b	na	na	(15)
H. sapiens	XPC	3	TGTTGAT	−4b	na	na	(16)
H. sapiens	XPC	3	TACTGAT	−24b	na	na	(16)
M. musculus	Hbb-b2	1	CACTAAC	−36b	−36A	3.85	(25)
M. musculus	Igh	5	AATTCAC	−22b	−22A	3.30	(14)
R. norvesicus	Ins1	1	CCTCAAC	−18b	−18A	3.15	(25)
O. cuniculus	Hbb	1	TGCTGAC	−34b	−34A	3.85	(25)
O. cuniculus	Hbb	2	TGCTAAC	−32b	−32A	3.75	(28)
Adenovirus 5	E1A	1	GTTTAAA	−30b	−30A	2.70	(25)
Adenovirus 2	E2a-2	1	GACTGAC	−26b	−26A	3.70	(42)
Adenovirus 5	Major Late	1	TACTTAT	−24b	−24A	3.05	(42)
SV40	T antigen	1	ATTCTAA	−19b	−19A	2.00	(42)

^aPredicted BPs and BPS scores are according to the Branch-Site Analyzer at http://ast.bioinfo.tau.ac.il/BranchSite.htm (14). na, not available.

^bIdentified by the primer extension method.

^cIdentified by lariat RT-PCR.