Table 1.
Memory requirements (in megabytes of main memory) of five methods over 100 random tRNA pairs and 100 random 5S rRNA pairs
| tRNA | 5S rRNA | RNase P | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Min | Max | Avg | Min | Max | Avg | Min | Max | Avg | |
| PARTS | 16.1 | 193.5 | 58.1 | 26.9 | 111.4 | 50.4 | 212.8 | 7807.7 | 2042.2 |
| Dynalign | 15.9 | 22.0 | 17.7 | 17.3 | 21.1 | 18.6 | 38.3 | 548.6 | 141.3 |
| FOLDALIGN | 8.6 | 19.5 | 13.8 | 13.3 | 30.0 | 19.0 | 58.4 | 182.8 | 104.9 |
| Consan | 43.4 | 447.5 | 145.8 | 106.0 | 863.6 | 172.7 | N/A | N/A | N/A |
| StemLoc | 52.2 | 625.7 | 190.7 | 24.0 | 327.5 | 168.7 | N/A | N/A | N/A |
| LocARNA | 7.5 | 7.6 | 7.6 | 7.6 | 7.9 | 7.7 | 8.9 | 10.4 | 9.5 |
‘Min’ corresponds to minimum memory usage, ‘Max’ corresponds to maximum memory usage, and ‘Avg’ corresponds to average memory usage.