Table 1.
List of 11 cell line pairs detected to have very similar genotype profiles, evaluated on a set of 5.3K SNPs
| No of mismatches | |||||
|---|---|---|---|---|---|
| Cell line name (CL1) | Cell line name (CL2) | Distance D | Percentage of valid calls | Homozygous (AA)– Homozygous (BB) [or vice versa] | Homozygous (AA or BB)– Heterozygous (AB) [or vice versa] |
| M14 | MDA.MB435 | 0.0747 | 0.794 | 2 | 311 |
| MCF7 | BT.20 | 0.0279 | 0.781 | 0 | 115 |
| MCF7 | KPL.1 | 0.0271 | 0.797 | 0 | 114 |
| NCI.ADR.RES | OVCAR.8 | 0.0076 | 0.874 | 0 | 35 |
| NCI.H460 | H2195 | 0.0680 | 0.696 | 0 | 250 |
| SNB.19 | U251 | 0.0394 | 0.866 | 0 | 180 |
| 184A1 | 184B5 | 0.1084 | 0.978 | 37 | 523 |
| BT.20 | KPL.1 | 0.0308 | 0.831 | 1 | 134 |
| H1450 | H2141 | 0.0092 | 0.866 | 0 | 42 |
| H1450 | H220 | 0.0000 | 0.861 | 0 | 0 |
| H2141 | H220 | 0.0088 | 0.857 | 0 | 40 |