Fig. 1.
Properties of the good (left) and bad models (right). (A,B) Percentage sequence identity between the target and the template. (C,D) Model length. (E,F) Target chain coverage (the fraction of the target chain residues that were modeled). (G,H) Template domain coverage (the fraction of the template domain residues that were aligned to the target chain). The domain coverage was calculated using the domain definitions in the CATH database (Orengo et al. 1997). (I,J) Structural overlap between the target model and the actual target structure expressed as percentage of the equivalent Cα atoms (Materials and Methods).