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. 2002 Feb;11(2):350–360. doi: 10.1110/ps.18602

Fig. 4.

Fig. 4.

Comparison between sequence-derived and structure-derived substitution matrices. The amino-acid pair frequency distributions that were used for the derivation of the substitution matrices were compared by the Jensen-Shannon divergence. A series of BLOSUM matrices were compared with the mutually persistently conserved-derived matrix (filled squares) and with the structurally derived matrix (open circles).