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. 2002 Mar;11(3):487–499. doi: 10.1110/ps.29002

Table 2.

Structure validation parameters for human β2-m conformers from NMR data refinement (DISCOVER)

Parameter This work Consensus standarda
Total residues/selected residuesb 100/83 74 ± 39/62 ± 36
Number of conformers 20 20 ± 15
Restraints per residuec,d 10.3 11.3 ± 4.5
NOE rms violation (/10−1 nm)e 0.079 0.061 ± 0.043
Ramachandran qualityb
Residues in most-favored regions 70.5% 73.6 ± 15.5%
Residues in additional allowed regions 28.2% n.a.
Residues in generously allowed regions 1.0% n.a.
Residues in disallowed regions 0.3% n.a.
Average G-factorsb,f
    ϕ − Ψ −1.13 n.a.
    χ1 −χ2 −1.03 n.a.
    χ1 only −0.14 n.a.
    overall −0.98 n.a.

n.a., not available.

a From Doreleijers et al. 1998.

b According to Doreleijers et al. (1998) the listed parameters, except for the NOE rms violation, were calculated on well-defined segments of the protein, namely only those residues for which the average of the circular variance of the backbone angles φ and Ψ was <0.2 were included in the selected segments.

c To avoid the redundancy of considering upper and lower bounds, only a single distance bound per internuclear separation was included in the count. Thus, only 789 NOE and 67 dihedral angle restraints were included in the count.

d Referred to the reduced NOE-restraint set above considered from well-defined segments.

e Referred to all residues.

f Low G-factors indicate low-probability conformations (Laskowski et al. 1996). As a rule of thumb, acceptable overall values range around −1.