Table 3.
Numerical analysis of secondary structural specificity determinants
| Non-redundant occurrence of NN motif in the PDBa | 5041 |
| a) found in α-helical structureb | 8.1% |
| b) found in β-sheet structureb | 5.9% |
| c) found in loops, turns or undefined conformationsb | 86.0% |
| Frequency of serine found in hydrophobic core of coiled-coilsc | 11% |
a Performed on a nonredundant version of the Brookhaven Protein Database with 1021 protein sequences.
b Secondary structures were determined by SEQSEE and VADAR.
c Normalized occurrence relative to leucine (=100) (Tripet et al. 2000).