Fig. 11.

Prediction of the ubiquitin-conjugating enzyme (PDB code: 2aak): TRUE: the 3D structure encoded in terms of PBs. P. PB: Prediction with a Bayesian probabilistic approach based on the amino acid specificity of the PBs. (Prediction rate: 30.5% [de Brevern et al. 2000].) P. SW: Prediction with a Bayesian probabilistic approach based on the amino acid specificity of the SWs (prediction rate: 41%). Cons: Agreement and discrepancies of the two sets of prediction results compared with the PB assignment (−) no true PB found, (ø) true PB only found with P. PB, (○) true PB only found with P. SW and (|s2) true PB found with both approaches.