Table 5.
Strain | # contigs | Sizes (kbp) | Total size in Mbp (% of genome) | ||
Min. | Mean | Max. | |||
YK placed | 39 | 20 | 108 | 307 | 4.2 (91%) |
YK unplaced | 424 | 0.08 | 1.2 | 41 | 0.5 (9%) |
YA placed | 49 | 2.5 | 71 | 272 | 3.5 (81%) |
YA unplaced | 312 | 0.01 | 2.6 | 70 | 0.8 (19%) |
For each genome we report aggregate statistics for the contigs in the final scaffold (placed) and the contigs that could not be scaffolded (unplaced). Numbers refer to contigs obtained after collapsing simple chains in the contig graph.