Fig. 8.

Molecular modeling of 1ah1 from 6fab-H. The sequence of the 1ah1 PDB file was used for a PSI-BLAST search (E value set to 100) onto the nr databank. After PSI-BLAST had converged (fifth run), the matching regions between the query and the first detected PDB entry (6fab-H) were aligned by CLUSTALW (1.8) with default parameters. The predicted consensus secondary structure of both sequences was obtained from the NPS@ server (A). The Sov value between predicted secondary structures is 89.8%. Superposition (B) of the 1ah1 model generated with 6fab-H as the template and the experimental 1ah1structure. Sheets are colored in red for 1ah1 and yellow for 6fab-H.