Table 1.
Species | subTIR* | Insertion preference | No. of copies† | Average % identity (STD)‡ |
D. melanogaster | ATACCCGTTACTC | TT | 355 | 89.66 (3.57) |
D. simulans | ATACCCGTTACTC | TT | 478 | 90.06 (3.36) |
D. sechellia | ATACCCGTTACTC | TT | 502 | 90.16 (3.38) |
D. yakuba | ATACCCGTTACTC | TT | 5,424 | 96.43 (3.31) |
D. erecta | ATACCCGTTACTC | TT | 1,013 | 91.08 (3.41) |
D. ananassae | TATACCCTTGCAG | TT | 5,027 | 97.15 (3.32) |
D. persimilis | TATACCCGATACT | TT | 1,103 | 96.63 (3.29) |
D. pseudoobscura | TATACCCGATACT | TT | 1,047 | 95.39 (4.24) |
D. willistoni type 1 | TATACCATACACC | TT | 2,396 | 96.70 (4.13) |
D. willistoni type 2 | TATACCCTTGCAA | TT | 2,828 | 96.13 (3.47) |
D. willistoni type 3 | TATACCCTTGCAG | TT | 1,073 | 96.69 (2.93) |
D. mojavensis | ATACCCTGAACCC | TT | 5,190 | 93.17 (4.64) |
D. virilis | ATACCCTGAACCC | TT | 3,222 | 94.40 (3.20) |
D. grimshawi | TACCCTGAACCCA | TT | 334 | 87.89 (4.34) |
*subTIR of D. mojavensis is from the 5' side; the 3' subTIR has a single mismatch (Figure 2). †Number of hits found by BLAST search using block A consensus of DINE-1 of each species. Only hits > 100 bp in length were included. ‡Means (and standard deviations (STD) in parentheses) of percentage identity between the DINE-1 consensus to all BLAST hits of block A.