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. 2008 Feb 7;9(2):R29. doi: 10.1186/gb-2008-9-2-r29

Table 1.

Amino acids significantly preferred (-) or avoided (+) at 3' ends of exons across species

Amino acids*†

A C D E F G H I K L4 L2 M N P Q R4 R2 S4 S2 T V W Y Species (number of exons)
+3 -7 -3 -2 -1 -5 -6 +2 +1 -4 +4 Human (178,438)
+3 -6 -3 -2 -1 -5 -4 +1 +2 -7 +5 +4 Mouse (126,268)
-4 -5 +3 -1 -2 -6 +2 +1 -3 +4 D. rerio (41,264)
+4 -1 +3 -6 -2 +5 -3 +1 -4 +2 -5 C. elegans (79,958)
-6 +3 -2 +4 -8 -3 +5 -5 -1 +6 +2 -7 +1 -4 C. briggsae (74,178)
-1 -3 -2 +2 +1 -4 A. gambiae (7,930)
-2 +1 -1 -3 +2 D. melanogaster (48,933)
-2 +1 -5 -1 -4 +5 +3 +2 +6 +4 -3 A. mellifera (45,426)
+2 -2 -1 -3 +3 +1 A. thaliana (109,900)
S. pombe (2,403)
-1 S. cerevisiae (417)

*Indices signify rank order of slope coefficients, separately for negative and positive trends. L2, R2, S2 and L4, R4, S4 signify the two-fold and four-fold degenerate blocks of leucine, arginine, and serine, respectively. S. cerevisiae terminal exons were retained given the small number of genes with more than one intron (eight).