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. 2008 Feb 7;9(2):R29. doi: 10.1186/gb-2008-9-2-r29

Table 3.

Amino acids significantly preferred (-) or avoided (+) at 3' (top rows) and 5' (bottom rows) exon ends of C. neoformans compared to human

Amino acids*†

A C D E F G H I K L4 L2 M N P Q R4 R2 S4 S2 T V W Y Species (number of exons)
+3 -7 -3 -2 -1 -5 -6 +2 +1 -4 +4 Human (178,438): 3'
-6 +1 -2 +4 -7 -1 +3 -3 +6 -5 +2 +5 -4 C. neoformans (28,446): 3'
+2 -4 -5 +7 -3 -1 -2 -8 -6 +1 +4 +3 -7 +5 +6 Human (178438): 5'
-9 -5 -7 -3 -1 -6 +2 +3 -4 +1 -8 -10 -2 C. neoformans (28,446): 5'

*Indices signify rank order of slope coefficients, separately for negative and positive trends. L2, R2, S2 and L4, R4, S4 signify the two-fold and four-fold degenerate blocks of leucine, arginine, and serine, respectively.