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Positional weight matrix for HNF4α sites (TRANSFAC® accession number M01031, identifier V$HNF4_Q6_01)
| A | 19 | 5 | 11 | 5 | 2 | 52 | 46 | 49 | 0 | 3 | 3 | 1 | 46 | 17 |
| C | 8 | 2 | 3 | 16 | 48 | 1 | 2 | 0 | 0 | 1 | 19 | 47 | 2 | 15 |
| G | 21 | 46 | 30 | 20 | 2 | 0 | 10 | 9 | 58 | 26 | 7 | 2 | 6 | 14 |
| T | 10 | 5 | 14 | 17 | 6 | 5 | 0 | 0 | 0 | 28 | 29 | 8 | 4 | 12 |
| Consensus* | N | G | G | N | C | A | A | A | G | K | Y | C | A | N |
*Two 'half-matrices' (M01032, V$HNF4_Q6_02; and M01033, V$HNF4_Q6_03) corresponding to the DR1 repeat are shown in bold and refer to the frequency of a nucleotide of the matrix.
