Table 6.
Shift-probe sequences
| Gene symbol* | Gene name† | Oligo-name‡ | Location (rel.TSS)§ | Score¶ | Sequence¥ |
| TCF1/HNF1 | hepatic nuclear factor 1 | HNF1 | -265 | 0.988 | AAGGCTGAAGTCCAAAGTTCAGTCCCTTC |
| APOB | Apolipoprotein B | APOB | -86 | 0.905 | GGAAAGGTCCAAAGGGCGCCTTG |
| SERPINA1/AAT | alpha-1-antitrypsin | GS21 | -134 | 0.865 | CAACAGGGGCTAAGTCCACTGGC |
| AGT | angiotensinogen | GS47 | -429 | 0.905 | TGCAGAGGGCAGAGGGCAGGGGA |
| APOC3 | Apolipoprotein C3 | GS104 | -93 | 0.995 | GGCGCTGGGCAAAGGTCACCT GC |
| CYP2D6 | cytochrome P450, family 2, subfamily D, polypeptide 6 | GS105 | -69 | 0.989 | AGCAGAGGGCAAAGGCCATCATC |
| TF | Transferring | GS106 | -76 | 0.817 | ACGGGAGGTCAAAGATTGCGCCC |
| ALDH2 | aldehyde dehydrogenase 2 family (mitochondrial) | GS107 | -332 | 0.817 | CATTGGGGTCAAAGGCACACATT |
| APOC2 | apolipoprotein C2 | GS108 | -159 | 0.916 | TGTCTAGGCCAAAGTCCTGGCCA |
| PCK1 | phosphoenolpyruvate carboxykinase 1 (soluble) | GS109 | -455 | 0.923 | GGTCACAGTCAAAGTTCATGGGA |
| NCOA2 | nuclear receptor coactivator 2 | GS110 | -485 | 0.981 | ATGGGAGGGCAAAGGGCAATGCC |
| TFF2 | trefoil factor 2 | GS111 | -495 | 0.978 | AAGATGGGACAAAGGGCATCGTG |
| CHEK1 | CHK1 checkpoint homolog | GS112 | +5 | 0.976 | AGTGGTGGGCAAAGGACAGTCCG |
| CD63 | CD63 antigen (melanoma 1 antigen) | GS113 | -182 | 0.967 | CTGCAGGAGCAAAGGACAGAAGT |
| SH3GL2 | SH3-domain GRB2-like 2 | GS114 | -393 | 0.964 | CGCCAGGCTCAAAGGGCAGGAGG |
| RND2 | Rho family GTPase 2 | GS115 | 0.923 | AGGGCAGGTCAGAGTTCAAGCGA | |
| ESRRBL1 | estrogen-related receptor beta like 1 | GS116 | +63 | 0.91 | CAGAACGGACAGAGTCCAGCGTG |
| DDB1 | damage-specific DNA binding protein 1, 127 kDa | GS117 | -295 | 0.909 | GGGGAAGGGCAAAGGGCGCGGAA |
| NEUROG3 | neurogenin 3 | GS118 | -225 | 0.896 | GATTCCGGACAAAGGGCCGGGGT |
| IL6 | interleukin-6 | GS119 | -149 | 0.889 | ACTAGGGGGAAAAGTGCAGCTTA |
| AZI2 | 5-azacytidine induced 2 | GS120 | -217 | 0.793 | GGACCCCCCAAAAGGACACTGAG |
| CFL2 | cofilin 2 (muscle) | GS121 | -676 | 0.792 | CGAGGCGAGAAAAGCCCCCCGCA |
| GPHN | gephyrin | GS122 | +733 | 0.79 | GACTGAGAGGAAAGGATAGCACA |
| C14orf119 | Chromosome 14 open reading frame 119 | GS123 | -610 | 0.786 | CAAGCGGCTCAAAGGGGTGAGGA |
| PPP1R3C | protein phosphatase 1, regulatory (inhibitor) subunit 3C | GS124 | -142 | 0.772 | CGAGACGTGCAGAGAGCTATCTG |
| AKR1C3 | aldo-keto reductase family 1, member C3 (3-alpha hydroxysteroid dehydrogenase, type II) | GS125 | -481 | 0.763 | GAAAATGTAAAAAGGCAAATATT |
| NPAS2 | neuronal PAS domain protein 2 | GS126 | -395 | 0.759 | GAGCCGGCCCAGAGGAGAGGCAA |
| SAG | S-arrestin | GS127 | -106 | 0.754 | CCTGGGAGACAGAGCAAGACTCC |
| CLCN3 | chloride channel 3 | GS128 | -377 | 0.753 | AGCGTCACGCAGAGTTCGGATCC |
| CBX3 | chromobox homolog 3 (HP1 gamma homolog, Drosophila) | GS129 | -525 | 0.748 | GCGGAAGGCTAGAGTCCTGCTAG |
*†The gene symbol and gene name of the gene where the corresponding HNF4 site was analyzed. ‡The internal name of the oligonucleotide used in the study. §Location of the site in the promoter of the gene. The position of the 5' end of the site is given relative to the TSS. ¶The score was computed using the HNF4 PWM constructed in the course of this study (Table 2). ¥Sequence of the oligonucleotide used in the study. The central part of the oligonucleotide, which corresponds to the most conserved core of the HNF4 motif, is given in bold.