Table 1.
Blast2GO performance figures of seven cDNA datasets. FE: percentage of sequences with some functional evidence (Mapping or InterProScan positive). BA: percentage of blast-based annotated sequences, #GO: number of GOs per sequence. GO L: mean GO level. IP: percentage of annotation increase by InterProScan. Ann: percentage of annotation increase by Annex. TA: total percentage of annotated sequences (including blast and InterPro). Datasets are described in [37].
| DataSet | FE | BA | no. GOs | GO L | IP | Ann | TA |
|---|---|---|---|---|---|---|---|
| C. clementina | 70.2 | 58.2 | 4.4 | 5.10 | 7.9 | 11.8 | 62.3 |
| M. incog | 70.7 | 55.7 | 5.6 | 4.95 | 11.8 | 9.9 | 63.9 |
| T. harzianum | 61.1 | 47.7 | 3.6 | 5.27 | 14.4 | 16.2 | 53.4 |
| G. max | 61.8 | 51.1 | 4.3 | 5.11 | 6.1 | 11.8 | 53.5 |
| P. flesus | 50.1 | 34.4 | 5.2 | 5.07 | 21.9 | 10.6 | 45.1 |
| A. phagocytophilum | 56.6 | 42.5 | 3.0 | 4.91 | 35.4 | 20.9 | 49.1 |
| Whale metagenome | 69.5 | 50.7 | 3.0 | 4.45 | 17.6 | 18 | 58.8 |