Fig. 5.
Dynamic cross correlation matrix between the protein and peptide substrate (SUB) (or gem-diol intermediate [INT]). (a) Wild type/SUB; (b) MUT/SUB; (c) wild type/INT; (d) MUT/INT. The maps have been calculated for the Cα atoms from the molecular dynamics simulation. Coloring goes from red (+1) to green (+0.4) to blue (<−0.1). The map elements range between ±1. A value >+0.5 reflects a high correlation between the motions of a pair of Cα atoms.