Figure 5.

Genomic region that contains one protein binding site. A. Relative likelihood of RNase digestion at each genomic locus. B. Similarity between the distribution of experimentally-detected amplicons and simulated amplicons assuming protein binding occurs at the each locus. A higher correlation coefficient implies higher probability of protein binding. C. Distribution of detected RNA fragments. D. Distribution of simulated fragments based on the best prediction locus (marked as blue ellipse).