Table 3.
Probea) | Sequence | % Formamide | Target group | Reference |
EUB338 | GCTGCCTCCCGTAGGAGT | 35 | Most bacteria | [58] |
NON338 | ACTCCTACGGGAGGCAGC | 35 | Competitor of EUB | [59] |
ALF968 | GGTAAGGTTCTGCGCGT | 20 | Alphaproteobacteria | [60] |
BET42ab) | GCCTTCCCACTTCGTTT | 35 | Betaproteobacteria | [61] |
GAM42ab) | GCCTTCCCACATCGTTT | 35 | Gammaproteobacteria | [61] |
PLA886b) | GCCTTGCGACCATACTCCC | 35 | Planctomycetes | [62] |
HGC96a | TATAGTTACCACCGCCGT | 25 | Actinomycetes | [63] |
CF319a | TGGTCCGTGTCTCAGTAC | 35 | Bacteroidetes | [64] |
a) Probes were labelled with cy 3 b) For these probes, a competitor probe was used