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. 2008 Apr 10;8:58. doi: 10.1186/1471-2180-8-58

Table 3.

Oligonucleotide probes used in this study

Probea) Sequence % Formamide Target group Reference
EUB338 GCTGCCTCCCGTAGGAGT 35 Most bacteria [58]
NON338 ACTCCTACGGGAGGCAGC 35 Competitor of EUB [59]
ALF968 GGTAAGGTTCTGCGCGT 20 Alphaproteobacteria [60]
BET42ab) GCCTTCCCACTTCGTTT 35 Betaproteobacteria [61]
GAM42ab) GCCTTCCCACATCGTTT 35 Gammaproteobacteria [61]
PLA886b) GCCTTGCGACCATACTCCC 35 Planctomycetes [62]
HGC96a TATAGTTACCACCGCCGT 25 Actinomycetes [63]
CF319a TGGTCCGTGTCTCAGTAC 35 Bacteroidetes [64]

a) Probes were labelled with cy 3 b) For these probes, a competitor probe was used