Table 2.
List of Abbreviations
| Abbreviation | Full Name | Abbreviation | Full Name |
| 2dr1p | 2-Deoxy-D-ribose 1-phosphate | agpe_EC | acyl-glycerophospoethanolamine (E. coli) ** |
| 2dr5p | 2-Deoxy-D-ribose 5-phosphate | apg_EC | acyl phosphatidylglycerol (E. coli) ** |
| 3HCINNMH | 3-hydroxycinnamate hydroxylase | asp-L | L-Aspartate |
| 3HPPPNH | 3-(3-hydroxy-phenyl)propionate hydroxylase | aspsa | L-Aspartate 4-semialdehyde |
| 3hcinnm | 3-hydroxycinnamic acid | atp | ATP |
| 3hcinnm [e] | 3-hydroxycinnamic acid (Extracellular) | cechddd | cis-3-(3-carboxyethyl)-3,5-cyclohexadiene-1,2-diol |
| 3hpppn | 3-(3-hydroxy-phenyl)propionate | dhcinnm | 2,3-dihydroxicinnamic acid |
| 3hpppn [e] | 3-(3-hydroxy-phenyl)propionate (Extracellular) | dhpppn | 3-(2,3-Dihydroxyphenyl)propanoate |
| 4h2opntn | 4-Hydroxy-2-oxopentanoate | etha | Ethanolamine |
| 4pasp | 4-Phospho-L-aspartate | fum | Fumarate |
| ACALDt | acetaldehyde reversible transport | g3p | Glyceraldehyde 3-phosphate |
| ASAD | aspartate-semialdehyde dehydrogenase | g3pe | sn-Glycero-3-phosphoethanolamine |
| ASPK | aspartate kinase | gly | Glycine |
| DHCINDO | 2,3-dihydroxycinnamate 1,2-dioxygenase | glyc3p | Glycerol 3-phosphate |
| DHPPD | 2,3-dihydroxyphenylpropionate dehydrogenase | h | H+ |
| DRPA | deoxyribose-phosphate aldolase | h2o | H2O |
| ETHAAL | Ethanolamine ammonia-lyase | h [e] | H+ (Extracellular) |
| GPDDA2 | Glycerophosphodiester phosphodiesterase | hdca | Hexadecanoate (n-C16:0) |
| HCINNMt2r | 3-hydroxycinnamic acid transport | hdcea | hexadecenoate (n-C16:1) |
| HKNDDH | 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase | hkndd | 2-Hydroxy-6-oxonona-2,4-diene-1,9-dioate |
| HKNTDH | 2-hydroxy-6-ketononotrienedioate hydrolase | hkntd | 2-hydroxy-6-ketononatrienedioate |
| HOPNTAL | 4-hydroxy-2-oxopentanoate aldolase | hom-L | L-Homoserine |
| HPPPNDO | 2,3-dihydroxypheylpropionate 1,2-dioxygenase | na1 | Sodium |
| HPPPNt2r | 3-(3-hydroxyphenyl)propionate transport | na1 [e] | Sodium (Extracellular) |
| HSDy | homoserine dehydrogenase (NADPH) | nad | Nicotinamide adenine dinucleotide |
| HSK | homoserine kinase | nadh | Nicotinamide adenine dinucleotide – reduced |
| LPLIPA2 | Lysophospholipase L (acyl-glycerophosphoethanolamine) | nadp | Nicotinamide adenine dinucleotide phosphate |
| LPLIPA4 | Lysophospholipase L (acyl transfer to phosphatidylglycerol) | nadph | Nicotinamide adenine dinucleotide phosphate – reduced |
| NAt3_1 | sodium proton antiporter (H:NA is 1:1) | nh4 | ammonium |
| NAt3_1.5 | sodium proton antiporter (H:NA is 1.5) | o2 | O2 |
| NAt3_2 | sodium proton antiporter (H:NA is 2) | o2 [e] | O2 (Extracellular) |
| O2t | o2 transport (diffusion) | ocdcea | octadecenoate (n-C18:1) |
| OP4ENH | 2-oxopent-4-enoate hydratase | op4en | 2-Oxopent-4-enoate |
| PLIPA2 | Phosphlipase A (phosphatidylethanolamine) | pe_EC | Phosphatidylethanolamine (Ecoli) ** |
| PPM2 | phosphopentomutase 2 (deoxyribose) | pg_EC | Phospatidylglycerol (Ecoli) ** |
| PPPNDO | Phenylpropanoate Dioxygenase | phom | O-Phospho-L-homoserine |
| PPPNt2r | 3-phenylpropionate transport | pi | Phosphate |
| THRAr | Threonine Aldolase | pppn | Phenylpropanoate |
| THRS | threonine synthase | pppn [e] | Phenylpropanoate (Extracellular) |
| THRabc | L-threonine transport via ABC system | pyr | Pyruvate |
| THRt2r | L-threonine reversible transport via proton symport | succ | Succinate |
| THRt4 | L-threonine via sodium symport | thr-L | L-Threonine |
| acald | Acetaldehyde | thr-L [e] | L-Threonine (Extracellular) |
| acald [e] | Acetaldehyde (Extracellular) | ttdca | tetradecanoate (n-C14:0) |
| adp | ADP | ttdcea | tetradecenoate (n-C14:1) |
List of metabolites, reactions, and their abbreviations.