TABLE 1.
Transcription factors and regulators present in different eukaryotic species
| Photosynthetic species
|
Nonphotosynthetic species
|
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Family | CME | OTA | CRE | PPA | OSAJ | ATH | PTR | HSA | DME | CEL | SCE | GLA |
| ABI3VP1 | 1 | 30 | 59 | 59 | 81 | |||||||
| Alfin-like | 7 | 12 | 8 | 9 | ||||||||
| AP2-EREBP | 8 | 11 | 150 | 174 | 160 | 206 | ||||||
| ARF | 13 | 42 | 32 | 36 | ||||||||
| ARR-B | 1 | 1 | 5 | 9 | 15 | 15 | ||||||
| BBR/BPC | 3 | 10 | 15 | |||||||||
| BES1 | 6 | 6 | 10 | 12 | ||||||||
| bHLH | 1 | 1 | 4 | 100 | 175 | 160 | 159 | 154 | 65 | 50 | 7 | |
| bZIP | 3 | 7 | 7 | 37 | 113 | 93 | 84 | 59 | 32 | 39 | 12 | 1 |
| C2C2-CO-like | 3 | 1 | 11 | 21 | 19 | 14 | ||||||
| C2C2-Dof | 2 | 1 | 20 | 33 | 42 | 41 | ||||||
| C2C2-GATA | 6 | 4 | 6 | 12 | 37 | 30 | 36 | 15 | 7 | 14 | 10 | |
| C2C2-YABBY | 13 | 7 | 13 | |||||||||
| C2H2 | 7 | 4 | 5 | 56 | 103 | 104 | 113 | 644 | 312 | 150 | 39 | 5 |
| CAMTA | 1 | 7 | 6 | 7 | 2 | 1 | 2 | |||||
| CCAAT | 6 | 8 | 8 | 27 | 58 | 53 | 59 | 25 | 11 | 12 | 10 | 3 |
| CPP | 2 | 2 | 1 | 6 | 16 | 9 | 12 | 4 | 2 | 2 | ||
| CSD | 4 | 1 | 3 | 3 | 4 | 7 | 16 | 4 | 5 | |||
| DBP | 7 | 5 | 10 | |||||||||
| E2F-DP | 5 | 3 | 6 | 10 | 12 | 11 | 10 | 18 | 3 | 7 | 1 | |
| EIL | 2 | 7 | 6 | 6 | ||||||||
| FHA | 2 | 7 | 12 | 15 | 19 | 17 | 18 | 44 | 22 | 12 | 14 | 2 |
| G2-likea | 1 | 2 | 4 | 41 | 52 | 48 | 66 | 1 | ||||
| GeBP | 6 | 20 | 7 | |||||||||
| GRAS | 39 | 56 | 35 | 97 | ||||||||
| GRF | 2 | 17 | 9 | 9 | ||||||||
| HB | 5 | 6 | 1 | 42 | 124 | 97 | 129 | 299 | 114 | 107 | 7 | |
| HRT | 7 | 1 | 2 | 1 | ||||||||
| HSF | 3 | 1 | 2 | 8 | 36 | 23 | 31 | 6 | 1 | 1 | 5 | |
| LFY | 2 | 1 | 1 | 1 | ||||||||
| LIM | 1 | 1 | 3 | 7 | 6 | 13 | ND | ND | ND | ND | ND | |
| MADS | 1 | 1 | 2 | 22 | 82 | 122 | 108 | 9 | 3 | 2 | 4 | |
| MYB | 11 | 10 | 11 | 61 | 129 | 161 | 210 | 19 | 5 | 7 | 3 | 2 |
| MYB-related | 21 | 17 | 14 | 44 | 99 | 90 | 100 | 36 | 16 | 12 | 12 | 2 |
| NAC | 32 | 140 | 115 | 163 | ||||||||
| NOZZLE | 1 | |||||||||||
| PBF-2 like/Whirly | 1 | 1 | 3 | 4 | 3 | |||||||
| PLATZ | 1 | 1 | 3 | 13 | 18 | 13 | 20 | |||||
| Pseudo ARR-B | 1 | 2 | 2 | 7 | 5 | 7 | ||||||
| RWP-RKb | 1 | 4 | 14 | 8 | 13 | 14 | 18 | |||||
| S1Fa-like | 1 | 2 | 3 | 2 | ||||||||
| SAP | 1 | 1 | ||||||||||
| SBP | 21 | 13 | 21 | 17 | 29 | |||||||
| Sigma70-likec | 4 | 1 | 1 | 5 | 9 | 6 | 9 | |||||
| SRS | 2 | 5 | 11 | 10 | ||||||||
| TAZ | 2 | 5 | 9 | 9 | 7 | 4 | 1 | 6 | ||||
| TCP | 6 | 22 | 26 | 33 | ||||||||
| Trihelix | 25 | 24 | 27 | 43 | 8 | 1 | ||||||
| TUB | 1 | 3 | 6 | 17 | 12 | 11 | 6 | 3 | 2 | |||
| ULT | 2 | 2 | 2 | |||||||||
| VOZ | 2 | 2 | 2 | 4 | ||||||||
| WRKYa | 2 | 1 | 37 | 114 | 84 | 101 | 1 | |||||
| zf-HD | 7 | 15 | 17 | 22 | ||||||||
| ZIM | 12 | 22 | 22 | 16 | ||||||||
| ARIDd | 4 | 1 | 2 | 7 | 6 | 10 | 13 | 21 | 6 | 5 | 2 | |
| AUX/IAAd | 2 | 43 | 34 | 32 | ||||||||
| C3Hd | 7 | 18 | 15 | 44 | 97 | 75 | 96 | 85 | 33 | 40 | 7 | 5 |
| DDTd | 1 | 1 | 2 | 7 | 5 | 5 | 5 | 3 | 2 | 2 | ||
| HMGd | 5 | 7 | 8 | 17 | 19 | 12 | 90 | 26 | 22 | 7 | 3 | |
| Jumonjid | 3 | 5 | 7 | 10 | 17 | 19 | 20 | 38 | 11 | 15 | 3 | |
| LUGd | 1 | 12 | 3 | 5 | 6 | 1 | 1 | 1 | ||||
| MBF1d | 1 | 3 | 4 | 3 | 3 | 1 | 1 | 1 | 1 | |||
| PHDd | 7 | 11 | 12 | 50 | 55 | 53 | 70 | 118 | 44 | 23 | 14 | 2 |
| RBd | 1 | 1 | 1 | 2 | 4 | 1 | 1 | 4 | 2 | 1 | ||
| SETd | 6 | 10 | 22 | 26 | 32 | 38 | 44 | 49 | 17 | 29 | 7 | 3 |
| SNF2d | 13 | 20 | 19 | 35 | 44 | 43 | 48 | 48 | 22 | 23 | 17 | 6 |
Plant-specific TF and TR families are in italics; all other families are in roman. We also highlight TF families in italics that, in addition to plants, have members in early branching eukaryotes. Numbers represent distinct protein sequences. CME, C. merolae; OTA, O. tauri; CRE, C. reinhardtii; PPA, P. patens; OSAJ, O. sativa ssp. japonica; ATH, A. thaliana; PTR, P. trichocarpa; HAS, H. sapiens; DME, D. melanogaster; CEL, C. elegans; SCE, S. cerevisiae; GLA, G. lamblia. ND, not determined.
a
Present in G. lamblia.
b
Present in D. discoideum and E. histolytica (according to PFAM website).
c
Present in bacteria.
d
Transcription regulators (TRs).