TABLE 2.
Estimates of sequence differentiation (FST) and polymorphism (π) for amplified regions inside window, overlapping chromatin gene, and outside window
| Focal region | Amplicon (midpoint) | Amplicon size | FST | π (all) | π (tropical/temperate) |
|---|---|---|---|---|---|
| chd1 | 2L: 2980275 | 936 | 0.030 | 0.005 | 0.005/0.004 |
| 2L: 2985171 | 1405 | 0.170 | 0.008 | 0.008/0.007 | |
| 2L: 2989305 | 1426 | 0.001 | 0.007 | 0.008/0.005 | |
| chm (Australia) | 2L: 7407345 | 1044 | 0.180 | 0.015 | 0.014/0.031 |
| 2L: 7412208 | 1250 | 0.151 | 0.015 | 0.017/0.010 | |
| 2L: 7414710 | 1251 | 0.422 | 0.011 | 0.015/0.003 | |
| 2L: 7417734 | 1326 | 0.041 | 0.012 | 0.015/0.009 | |
| chm (United States) | 2L: 740735 | 1044 | 0.000 | 0.013 | 0.015/0.013 |
| 2L: 7412208 | 1250 | 0.007 | 0.015 | 0.015/0.017 | |
| 2L: 7413459 | 1251 | 0.100 | 0.012 | 0.012/0.015 | |
| 2L: 7417734 | 1326 | 0.045 | 0.004 | 0.015/0.012 | |
| glu | NA | NA | NA | NA | NA |
| 2L: 16732566 | 1358 | 0.120 | 0.010 | 0.010/0.008 | |
| 2L: 16735626 | 1113 | 0.090 | 0.009 | 0.008/0.010 | |
| 2L: 16738423 | 943 | 0.070 | 0.004 | 0.004/0.003 | |
| ssrp | 2R: 19308927 | 1099 | 0.001 | 0.008 | 0.009/0.008 |
| 2R: 19312582 | 1139 | 0.018 | 0.012 | 0.013/0.011 | |
| 2R: 19315342 | 1000 | 0.130 | 0.005 | 0.007/0.004 | |
| 2R: 19320319 | 1121 | 0.001 | 0.003 | 0.003/0.004 | |
| Mi-2 | 3L: 19813845 | 1072 | — | 0.000 | 0.003/0.007 |
| 3L: 19816984 | 1248 | 0.002 | 0.001 | 0.001/0.001 | |
| 3L: 19822410 | 932 | 0.000 | 0.001 | 0.001/0.001 | |
| HERC | X: 20211332 | 1014 | 0.015 | 0.005 | 0.004/0.006 |
| X: 20216217 | 1194 | — | 0.000 | 0.000/0.000 | |
| X: 20221822 | 1039 | 0.018 | 0.005 | 0.005/0.005 | |
| trr | X: 1737499 | 1089 | 0.012 | 0.002 | 0.002/0.002 |
| X: 1741745 | 929 | 0.001 | 0.002 | 0.002/0.002 | |
| X: 1745278 | 1083 | 0.028 | 0.002 | 0.002/0.002 |
Boldface type indicates amplified regions inside window and italics indicate the region overlapping the chromatin gene. Locations are from D. melanogaster reference genome release 4.3.