TABLE 3.
Peak no. | Continent | Amplicon (bp) | No. of SNPs (diff/total) | Noncoding/coding (diff) | π (tropical/temperate) |
---|---|---|---|---|---|
1 | Australia | 1010 | 3/38 | 3/0 | 0.015/0.010 |
2 | Australia | 1010 | 13/33 | 13/0 | 0.016/0.006 |
United States | 0/29 | 0/0 | 0.014/0.017 | ||
3 | Australia | 1044 | 7/25 | 5/2 | 0.009/0.008 |
United States | 1/32 | 1/0 | 0.014/0.014 | ||
4 | Australia | 1020 | 7/29 | 7/0 | 0.014/0.010 |
5 | Australia | 1250 | 11/34 | 9/2a | 0.017/0.010 |
United States | 2/33 | 1/1a | 0.015/0.017 | ||
6 | Australia | 1251 | 19/30 | 6/13a | 0.014/0.007 |
United States | 5/37 | 0/5a | 0.011/0.015 | ||
7 | Australia | 1251 | 23/34 | 17/6 | 0.015/0.003 |
United States | 2/39 | 2/0 | 0.016/0.014 | ||
8 | Australia | 1320 | 1/40 | 1/0 | 0.015/0.009 |
United States | 2/34 | 2/0 | 0.015/0.012 | ||
9 | Australia | 1250 | 4/26 | 4/0 | 0.009/0.009 |
United States | 0/26 | 0/0 | 0.009/0.009 | ||
10 | Australia | 1080 | 0/21 | 0/0 | 0.009/0.011 |
United States | 0/18 | 0/0 | 0.010/0.011 |
For each amplicon (“peak”) from Figure 1, the table lists the fraction of SNPs significantly differentiated between tropical and temperate regions (P ≤ 0.05 by permutation test; see materials and methods), as well as the number of SNPs significantly differentiated in the noncoding and coding regions of the amplicon. The peaks that overlap the chm gene region are in boldface. diff, significantly differentiated at the P ≤ 0.05 level.
Single replacement SNPs.