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. 2008 May;179(1):475–485. doi: 10.1534/genetics.107.085423

TABLE 3.

Polymorphism estimates and breakdown of SNP number and class across 35-kb region near chm, corresponding to Figure 1

Peak no. Continent Amplicon (bp) No. of SNPs (diff/total) Noncoding/coding (diff) π (tropical/temperate)
1 Australia 1010 3/38 3/0 0.015/0.010
2 Australia 1010 13/33 13/0 0.016/0.006
United States 0/29 0/0 0.014/0.017
3 Australia 1044 7/25 5/2 0.009/0.008
United States 1/32 1/0 0.014/0.014
4 Australia 1020 7/29 7/0 0.014/0.010
5 Australia 1250 11/34 9/2a 0.017/0.010
United States 2/33 1/1a 0.015/0.017
6 Australia 1251 19/30 6/13a 0.014/0.007
United States 5/37 0/5a 0.011/0.015
7 Australia 1251 23/34 17/6 0.015/0.003
United States 2/39 2/0 0.016/0.014
8 Australia 1320 1/40 1/0 0.015/0.009
United States 2/34 2/0 0.015/0.012
9 Australia 1250 4/26 4/0 0.009/0.009
United States 0/26 0/0 0.009/0.009
10 Australia 1080 0/21 0/0 0.009/0.011
United States 0/18 0/0 0.010/0.011

For each amplicon (“peak”) from Figure 1, the table lists the fraction of SNPs significantly differentiated between tropical and temperate regions (P ≤ 0.05 by permutation test; see materials and methods), as well as the number of SNPs significantly differentiated in the noncoding and coding regions of the amplicon. The peaks that overlap the chm gene region are in boldface. diff, significantly differentiated at the P ≤ 0.05 level.

a

Single replacement SNPs.