Table 3.
Transamidase activity of the M. thermautotrophicus (M.t.) GatCAB and GatDE, and the H. pylori (H.p.) GatCAB with different mischarged tRNA substrates *
Transamidase activity (ktrans, s−1) | |||
---|---|---|---|
aa-tRNAa | M.t. GatCABb | M.t. GatDEc | H.p. GatCABd |
M.t. GlutRNAGln | NDe | 0.98 ± 0.27 | 0.08 ± 0.02 |
H.p. Glu-tRNAGln | 0.08 ± 0.02 | 0.01 ± <0.01 | 3.12 ± 0.09 |
B.s. Glu-tRNAGln | 0.004 ± 0.003 | 0.01 ± <0.01 | 2.2 ± 0.1 |
C.t. Asp-tRNAAsn | 0.09 ± 0.01 | NDe | 1.27 ± 0.01 |
M.t. Asp-tRNAAsn | 0.11 ± 0.01 | NDe | 0.01 ± <0.01 |
Measurements were from three to four separate experiments. Standard deviations are reported. Reactions were carried out at 37 °C in the presence of ATP (4 mM), amide donor (4 mM), and aa-tRNA (10 µM) indicated. For reactions with the GatCAB enzymes, Gln was provided as the amide donor. In reactions with GatDE, Asn was the donor.
The aa-tRNA substrates tested were the M. thermautotrophicus (M.t.), H. pylori (H.p.), and B. subtilis (B.s.) Glu-tRNAGln, and the C. trachomatis (C.t.) and M. thermautotrophicus (M.t.) Asp-tRNAAsn.
In reactions with M.t. GatCAB, enzyme concentrations ranged from 20 nM to 1 µM.
In reactions with M.t. GatDE, enzyme concentrations ranged from 20 nM to 1 µM.
In reactions with H.p. GatCAB, enzyme concentrations ranged from 10 nM to 100 nM.
ND stands for no-detectable activity under conditions assayed.