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. Author manuscript; available in PMC: 2009 Mar 28.
Published in final edited form as: J Mol Biol. 2008 Jan 31;377(3):845–853. doi: 10.1016/j.jmb.2008.01.064

Table 3.

Transamidase activity of the M. thermautotrophicus (M.t.) GatCAB and GatDE, and the H. pylori (H.p.) GatCAB with different mischarged tRNA substrates *

Transamidase activity (ktrans, s−1)
aa-tRNAa M.t. GatCABb M.t. GatDEc H.p. GatCABd
M.t. GlutRNAGln NDe 0.98 ± 0.27 0.08 ± 0.02
H.p. Glu-tRNAGln 0.08 ± 0.02 0.01 ± <0.01 3.12 ± 0.09
B.s. Glu-tRNAGln 0.004 ± 0.003 0.01 ± <0.01 2.2 ± 0.1
C.t. Asp-tRNAAsn 0.09 ± 0.01 NDe 1.27 ± 0.01
M.t. Asp-tRNAAsn 0.11 ± 0.01 NDe 0.01 ± <0.01
*

Measurements were from three to four separate experiments. Standard deviations are reported. Reactions were carried out at 37 °C in the presence of ATP (4 mM), amide donor (4 mM), and aa-tRNA (10 µM) indicated. For reactions with the GatCAB enzymes, Gln was provided as the amide donor. In reactions with GatDE, Asn was the donor.

a

The aa-tRNA substrates tested were the M. thermautotrophicus (M.t.), H. pylori (H.p.), and B. subtilis (B.s.) Glu-tRNAGln, and the C. trachomatis (C.t.) and M. thermautotrophicus (M.t.) Asp-tRNAAsn.

b

In reactions with M.t. GatCAB, enzyme concentrations ranged from 20 nM to 1 µM.

c

In reactions with M.t. GatDE, enzyme concentrations ranged from 20 nM to 1 µM.

d

In reactions with H.p. GatCAB, enzyme concentrations ranged from 10 nM to 100 nM.

e

ND stands for no-detectable activity under conditions assayed.