Table 1. Real-time quantitative PCR primers and reaction conditions.
Clone |
Primer |
PCR |
||||
---|---|---|---|---|---|---|
Name | Acc. no. | Name | Sequence | Location | Size (bp) | T (°C), [MgCl2] (mM), [NTP] (μM) |
EMP1 | NM_001423.1 | EMP1-2F | GACCTCATGCCATGGTCTTT | 1393–1412 | 237 | 62, 4, 0.5 |
EMP1-2R | CTGCATTGAGGGGAATCCTA | 1556–1575 | ||||
PIGR | AF272149.2 | TB6-1F | CCACCGTGGAGATCAAGATT | 1532–1551 | 186 | 62, 4, 0.5 |
TB6-1R | CAGCCCGTGTTATTCCACTT | 1669–1688 | ||||
PON2 | NM_000305 | AEY125-F | GCCAACAATGGGTCTGTTCT | 993–1012 | 198 | 62, 4, 0.5 |
AEY126-R | TGGGTCAATGTTGCTGGTTA | 1171–1190 | ||||
Apol2 | AF305225 | AEY131-F | AGGCAGATGAGCTCCGTAAA | 363–382 | 185 | 62, 4, 1 |
AEY131-R | GACCTGCTCAACTCCTCTG | 528–547 | ||||
DRG1 | D87953 | AEY139-F | GCTTTGGTCAGAGTGAATTGAA | 2717–2736 | 182 | 62, 4, 0.5 |
AEY140-R | CCGATCCCCGACTTTTCTAC | 2879–2898 | ||||
PSMD8 | NM_004159 | AEY147-F | GAAGGAAGATGGTTGGGTA | 981–998 | 189 | 62, 4, 0.5 |
AEY147-R | TCTCTTTGGCTCAGGCTAGG | 1150–1169 | ||||
RP1-68D18 | BM285393 | EAW253-F | TGCAAGTCACCACAACAGGT | 153 589–153 608 | 185 | 62, 4, 0.5 |
EAW254-R | AGCCTTGCATAAATGGCTGT | 153 753–153 773 | ||||
HSPC150 | NM_014176 | AEY151-F | TGTTCTCAAATTGCCACCAA | 390–409 | 191 | 62, 4, 1 |
AEY152-R | TTGCATGCTTCTCTGTCCAC | 516–580 | ||||
RPLP0 | M17885 | RPP0-3F | GAAGGCTGTGGTGCTGATGG | 224–243 | 103 | 62, 3, 1.5 |
RPLP0-R | CCGGATATGAGGCAGCAGTT | 307–326 |
Listed above are the clone names and accession numbers; the primer name, sequence (5′–3′) and location on the sequence associated with the accession number; and the PCR product size and reaction conditions (annealing temperature and concentrations of MgCl2 and NTP).