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. 2007 Jun 18;8(6):R116. doi: 10.1186/gb-2007-8-6-r116

Table 1.

Analysis of 3C data reveals significant differences between AT- and GC-rich chromatin in wild-type cells as well as significant effects of deletion of RPD3 on [k × L-3] in GC-rich chromatin

Experiment 1 Experiment 2 Experiment 3 Average




k × L-3 S c r2 k × L-3 S c r2 k × L-3 S c r2 k × L-3 S c
(M-1 nm-3 kb3) (kb) (kb) (M-1 nm-3 kb3) (kb) (kb) (M-1 nm-3 kb3) (kb) (kb) (M-1 nm-3 kb3) (kb) (kb)
WT-GC 309 3.6 202 0.92 528 4.3 ND 0.71 576 4.9 171 0.96 471 ± 82 4.26 ± 0.38 190
rpd3Δ-GC 240 3.7 186 0.9 314 3.9 ND 0.83 171 3.1 155 0.94 241 ± 41 3.6 ± 0.24 171
WT-AT 1,026 4.9 ND 0.89 1,425 5.8 ND 0.64 1,256 6.2 738 0.9 1,235 ± 111 5.6 ± 0.38 738
rpd3Δ-AT 1,281 5.5 ND 0.9 1,370 5.8 ND 0.74 1,094 5.3 ND 0.82 1,248 ± 81 5.53 ± 0.15 ND

rpd3Δ-AT, AT-rich chromatin in rpd3Δ cells; rpd3Δ-GC, GC-rich chromatin in rpd3Δ cells; WT-AT, AT-rich chromatin in wild-type cells; WT-GC, GC-rich chromatin in wild-type cells.