Table 2.

Summary of SNPs within ANC sequences and power CNC sequences associated to differential gene expression

Population	Sequence	Number of tested ANC/CNC sequences	Number of SNPs	Number of probes tested	Number of associations	Number of significant ANC/CNC sequence to gene associations			Number of significant ANC/CNC sequences of those tested
						0.01	0.001	0.0001	0.01	0.001	0.0001
CEU	ANC	387	555	8,673	23,330	77	9	0	59 (15%)	9 (2%)	0 (0%)
	Power CNC	6,232	8,388	14,906	350,309	181	36	18	149 (2%)	33 (1%)	17 (0%)
CHB	ANC	356	499	8,092	21,291	83	13	0	56 (16%)	11 (3%)	0 (0%)
	Power CNC	5,737	7,579	14,893	317,518	202	41	15	159 (3%)	39 (1%)	15 (0%)
CHB and JPT	ANC	342	466	7,919	20,163	109	11	1	59 (17%)	9 (3%)	1 (0%)
	Power CNC	5,474	7,162	14,852	301,636	203	12	1	149 (3%)	12 (0	1 (0%)
JPT	ANC	355	490	8,197	21,166	88	12	0	59 (17%)	11 (3%)	0 (0%)
	Power CNC	5,674	7,531	14,852	315,476	241	48	20	194 (3%)	42 (1%)	19 (0%)
YRI	ANC	391	583	9,118	24,310	113	15	2	64 (16%)	15 (4%)	2 (1%)
	Power CNC	6,724	9,218	14,908	381,407	196	32	15	173 (3%)	30 (0%)	14 (0%)

Presented are results for four populations: the Yoruba people from Ibadan Nigeria (YRI), US residents with Northern and Western European ancestry (CEU), Han Chinese from Beijing (CHB), and Japanese from Tokyo (JPT). ANC, accelerated noncoding; CNC, conserved noncoding; SNP, single nucleotide polymorphism.