TABLE 4.
Strains of B. cepacia, B. cenocepacia, B. ambifaria, and B. pyrrocinia utilized for a phylogenetic analysis of recA sequences
| Species and straina | Source or relevant information | GenBank accession no. of recA sequence | Source or reference | |
|---|---|---|---|---|
| B. cepacia | ||||
| 3ST4 | Onion field soil | EU079008 | This study | |
| 4ST9 | Onion field soil | EU079004 | This study | |
| 5RT136 | Onion rhizosphere | EU079007 | This study | |
| 5RT161 | Onion rhizosphere | EU079011 | This study | |
| 6RP83 | Onion rhizosphere | EU079006 | This study | |
| 6RT68 | Onion rhizosphere | EU079005 | This study | |
| 6RT141 | Onion rhizosphere | EU079009 | This study | |
| 6SP128 | Onion field soil | EU079010 | This study | |
| KBC-3 | Maize rhizosphere | AY769897 | 40 | |
| ATCC 25416 | Onion | AF143786 | 31 | |
| B. cenocepacia | ||||
| 1RP102 | Onion rhizosphere | EU079000 | This study | |
| 3RP82 | Onion rhizosphere | EU078998 | This study | |
| 6RP111 | Onion rhizosphere | EU079003 | This study | |
| 6RT111 | Onion rhizosphere | EU078999 | This study | |
| 6RT130 | Onion rhizosphere | EU079001 | This study | |
| 6RT131 | Onion rhizosphere | EU079002 | This study | |
| AU1054 | Human pathogen | NC_008060.1 | 27 | |
| B9 | Banana, Taiwan | AY598028 | 26 | |
| CA2 | Banana, Taiwan | DQ664181 | 26 | |
| GQ52 | Banana, Taiwan | DQ664182 | 26 | |
| HI2424 | Soil | NC_008542 | 27 | |
| J2315 | Human pathogen, United Kingdom | −b | 31 | |
| KBC-4 | Maize rhizosphere | AY769898 | 40 | |
| K56-2 | Human pathogen, Canada | AF143779 | 31 | |
| MC0-3 | Maize rhizosphere | NZ_AAVA01000001 in silico
|
||
| MQ41 | Banana, Taiwan | DQ664183 | 26 | |
| PC184 | Human pathogen, United States | AF143784 | 31 | |
| B. ambifaria | ||||
| 2SP165 | Onion field soil | EU079012 | This study | |
| 5RT130 | Onion rhizosphere | EU079013 | This study | |
| 5SP7 | Onion field soil | EU079017 | This study | |
| 6RT55 | Onion rhizosphere | EU079016 | This study | |
| 6SP146 | Onion field soil | EU079018 | This study | |
| 6ST151 | Onion field soil | EU079014 | This study | |
| 6ST196 | Onion field soil | EU079015 | This study | |
| AMMD | Pea rhizosphere | NC_008390 | 36 | |
| AU0212 | Human isolate | AF456005 | 37 | |
| KBC-7 | Maize rhizosphere | AY769901 | 40 | |
| B. pyrrocinia | ||||
| 6RP78 | Onion rhizosphere | EU079020 | This study | |
| 6RT51 | Onion rhizosphere | EU079019 | This study | |
| 6RT94 | Onion rhizosphere | EU079021 | This study | |
| 6ST17 | Onion field soil | EU079023 | This study | |
| 6ST128 | Onion field soil | EU079022 | This study | |
| ATCC 39277 | Soil, United States | AF143801 | 14 | |
| BC011 | Water, United States | AF456045 | 14 | |
a
Codes for identification of B. cepacia complex strains from this study are as follows. The first number represents the populations, R or S refers to recovery from rhizosphere or soil, P or T refers to recovery on PCAT or TB-T medium, and the last number refers to the sampling date (1 to 50, first sampling date; 51 to 100, second sampling date; 101 to 150, third sampling date; 151 to 200, fourth sampling date).
b
Draft sequence information for B. cenocepacia J2315 recA is available from http://www.sanger.ac.uk/Projects/B_cenocepacia/.