TABLE 4.
Species and straina | Source or relevant information | GenBank accession no. of recA sequence | Source or reference | |
---|---|---|---|---|
B. cepacia | ||||
3ST4 | Onion field soil | EU079008 | This study | |
4ST9 | Onion field soil | EU079004 | This study | |
5RT136 | Onion rhizosphere | EU079007 | This study | |
5RT161 | Onion rhizosphere | EU079011 | This study | |
6RP83 | Onion rhizosphere | EU079006 | This study | |
6RT68 | Onion rhizosphere | EU079005 | This study | |
6RT141 | Onion rhizosphere | EU079009 | This study | |
6SP128 | Onion field soil | EU079010 | This study | |
KBC-3 | Maize rhizosphere | AY769897 | 40 | |
ATCC 25416 | Onion | AF143786 | 31 | |
B. cenocepacia | ||||
1RP102 | Onion rhizosphere | EU079000 | This study | |
3RP82 | Onion rhizosphere | EU078998 | This study | |
6RP111 | Onion rhizosphere | EU079003 | This study | |
6RT111 | Onion rhizosphere | EU078999 | This study | |
6RT130 | Onion rhizosphere | EU079001 | This study | |
6RT131 | Onion rhizosphere | EU079002 | This study | |
AU1054 | Human pathogen | NC_008060.1 | 27 | |
B9 | Banana, Taiwan | AY598028 | 26 | |
CA2 | Banana, Taiwan | DQ664181 | 26 | |
GQ52 | Banana, Taiwan | DQ664182 | 26 | |
HI2424 | Soil | NC_008542 | 27 | |
J2315 | Human pathogen, United Kingdom | −b | 31 | |
KBC-4 | Maize rhizosphere | AY769898 | 40 | |
K56-2 | Human pathogen, Canada | AF143779 | 31 | |
MC0-3 | Maize rhizosphere | NZ_AAVA01000001 in silico
|
||
MQ41 | Banana, Taiwan | DQ664183 | 26 | |
PC184 | Human pathogen, United States | AF143784 | 31 | |
B. ambifaria | ||||
2SP165 | Onion field soil | EU079012 | This study | |
5RT130 | Onion rhizosphere | EU079013 | This study | |
5SP7 | Onion field soil | EU079017 | This study | |
6RT55 | Onion rhizosphere | EU079016 | This study | |
6SP146 | Onion field soil | EU079018 | This study | |
6ST151 | Onion field soil | EU079014 | This study | |
6ST196 | Onion field soil | EU079015 | This study | |
AMMD | Pea rhizosphere | NC_008390 | 36 | |
AU0212 | Human isolate | AF456005 | 37 | |
KBC-7 | Maize rhizosphere | AY769901 | 40 | |
B. pyrrocinia | ||||
6RP78 | Onion rhizosphere | EU079020 | This study | |
6RT51 | Onion rhizosphere | EU079019 | This study | |
6RT94 | Onion rhizosphere | EU079021 | This study | |
6ST17 | Onion field soil | EU079023 | This study | |
6ST128 | Onion field soil | EU079022 | This study | |
ATCC 39277 | Soil, United States | AF143801 | 14 | |
BC011 | Water, United States | AF456045 | 14 |
Codes for identification of B. cepacia complex strains from this study are as follows. The first number represents the populations, R or S refers to recovery from rhizosphere or soil, P or T refers to recovery on PCAT or TB-T medium, and the last number refers to the sampling date (1 to 50, first sampling date; 51 to 100, second sampling date; 101 to 150, third sampling date; 151 to 200, fourth sampling date).
Draft sequence information for B. cenocepacia J2315 recA is available from http://www.sanger.ac.uk/Projects/B_cenocepacia/.