TABLE 5.
Estimates of ρ and θ
| Gene | ρa | Per site ρ | θ | Per site θ | ρ/θ | GARDb |
|---|---|---|---|---|---|---|
| gyrB | 14.0*** | 0.0200 | 4.949 | 0.00706 | 2.829 | Yes |
| rpoD | 100.0*** | 0.1550 | 7.328 | 0.01136 | 13.646 | Yes |
| pgi | 9.5 | 0.0167 | 4.380 | 0.00770 | 2.169 | No |
| gap1 | 13.5 | 0.0225 | 1.920 | 0.00320 | 7.031 | No |
| gltA | 5.0* | 0.0099 | 3.333 | 0.00657 | 1.500 | No |
| acnB | 7.0 | 0.00116 | 5.255 | 0.00867 | 1.332 | No |
| kup | 4.0*** | 0.0038 | 15.45 | 0.01450 | 0.259 | Yes |
| PSPTO_3994 | 70.5 | 0.0754 | 5.014 | 0.00536 | 14.061 | Yes |
| PSPTO_4019 | 80.0** | 0.1111 | 8.160 | 0.01133 | 9.804 | Yes |
| Mean | 33.722 | 0.046 | 6.198 | 0.008 | 5.847 |
a
Statistical significance for the presence of recombination determined by applying the likelihood permutation test. *, P < 0.10; **, P < 0.05; ***, P < 0.01; ρ, population recombination rate; θ, population mutation rate.
b
Yes, recombination breakpoints were found by the program GARD (30); No, recombination breakpoints were not detected by GARD.