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. 2008 Mar 31;74(10):3306–3309. doi: 10.1128/AEM.02082-07

TABLE 3.

Species-specific primers for each poisonous mushroom species

Targeted species Primer
Product length (bp)
Name Length (bp) Sequence (5′-3′) Positionb Tm (°C)c
O. japonicus OJSP-F 19 GTGCACGTTTCCTTTCAAT 59-77 60.12 107
OJSP-R 20 AGAATCATCAACAGAGCTGC 165-146 59.55
E. rhodopolius ERSP-F 22 TTTGAGAACTGCTGTGAAAATC 126-148 60.81 110
ERSP-R 23 GGCACAAAGTCCCTATATGTTTA 235-213 60.61
C. acromelalga CASP-F 19 GGTGCACACCTGATAACCA 53-71 62.09 108
CASP-R 20 AGCTTAAGCTTTCGCACCAG 160-141 63.39
T. ustale TUSP-F 22 TAGTAGGGACCTCTGTTGCCTT 501-522 62.77 80
TUSP-R 25 AACCTCCAATTTAAAGCTGCTTCAC 580-556 66.06
Universala ITS1 19 TCCGTAGGTGAACCTGCGG Variable 68.4 Variable
ITS2 20 GCTGCGTTCTTCATCGATGC 68.13
ITS3 20 GCATCGATGAAGAACGCAGC Variable 68.13 Variable
ITS4 20 TCCTCCGCTTATTGATATGC 61.49
a

White et al. (12).

b

Positions of nucleotides correspond with sequence of ITS region in each species. The nucleotide sequences were published in the DDBJ nucleotide sequence database under accession numbers AB301601, AB301602, AB301606, and AB036894 respectively.

c

Tm, melting temperature. Values were calculated with oligonucleotide calculator software (Sigma-Aldrich, Tokyo, Japan) on the web site (http://www.genosys.jp/adt/SGJ_NN_3rd.html).