TABLE 3.
Targeted species | Primer
|
Product length (bp) | ||||
---|---|---|---|---|---|---|
Name | Length (bp) | Sequence (5′-3′) | Positionb | Tm (°C)c | ||
O. japonicus | OJSP-F | 19 | GTGCACGTTTCCTTTCAAT | 59-77 | 60.12 | 107 |
OJSP-R | 20 | AGAATCATCAACAGAGCTGC | 165-146 | 59.55 | ||
E. rhodopolius | ERSP-F | 22 | TTTGAGAACTGCTGTGAAAATC | 126-148 | 60.81 | 110 |
ERSP-R | 23 | GGCACAAAGTCCCTATATGTTTA | 235-213 | 60.61 | ||
C. acromelalga | CASP-F | 19 | GGTGCACACCTGATAACCA | 53-71 | 62.09 | 108 |
CASP-R | 20 | AGCTTAAGCTTTCGCACCAG | 160-141 | 63.39 | ||
T. ustale | TUSP-F | 22 | TAGTAGGGACCTCTGTTGCCTT | 501-522 | 62.77 | 80 |
TUSP-R | 25 | AACCTCCAATTTAAAGCTGCTTCAC | 580-556 | 66.06 | ||
Universala | ITS1 | 19 | TCCGTAGGTGAACCTGCGG | Variable | 68.4 | Variable |
ITS2 | 20 | GCTGCGTTCTTCATCGATGC | 68.13 | |||
ITS3 | 20 | GCATCGATGAAGAACGCAGC | Variable | 68.13 | Variable | |
ITS4 | 20 | TCCTCCGCTTATTGATATGC | 61.49 |
White et al. (12).
Positions of nucleotides correspond with sequence of ITS region in each species. The nucleotide sequences were published in the DDBJ nucleotide sequence database under accession numbers AB301601, AB301602, AB301606, and AB036894 respectively.
Tm, melting temperature. Values were calculated with oligonucleotide calculator software (Sigma-Aldrich, Tokyo, Japan) on the web site (http://www.genosys.jp/adt/SGJ_NN_3rd.html).