TABLE 3.
Comparative analysis of ORFs encoded on the chromosomes of three Streptomyces species
| Distribution classa | No. of proteins classified byb:
|
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| BLASTP with threshold of indicated E value
|
BLASTCLUSTc
|
|||||||||
| <0.1
|
<10−20
|
|||||||||
| SGR | SCO | SAV | SGR | SCO | SAV | Clustersd | SGR | SCO | SAV | |
| SGR(+) SCO(+) SAV(+) | 6,586 | 7,203 | 7,004 | 4,944 | 5,191 | 5,111 | 3,039 | 3,204 | 3,280 | 3,240 |
| SGR(+) SCO(+) SAV(−) | 180 | 190 | 455 | 454 | 469 | 487 | 493 | |||
| SGR(+) SCO(−) SAV(+) | 153 | 173 | 319 | 304 | 302 | 310 | 307 | |||
| SGR(−) SCO(+) SAV(+) | 196 | 253 | 672 | 685 | 941 | 976 | 967 | |||
| SGR(+) SCO(−) SAV(−) | 219 | 1,420 | 2,998 | 3,137 | ||||||
| SGR(−) SCO(+) SAV(−) | 234 | 1,506 | 2,973 | 3,074 | ||||||
| SGR(−) SCO(−) SAV(+) | 153 | 1,483 | 2,992 | 3,069 | ||||||
a
+ and - indicate the presence and the absence of ORFs, respectively.
b
A total of 7,138 S. griseus, 7,823 S. coelicolor A3(2), and 7,583 S. avermitilis proteins are classified.
c
Proteins were clustered by the BLASTCLUST program with a threshold of 60% identity plus 70% length coverage.
d
The number of clusters, not proteins, is shown.