Table 2.
Comparison of the sequence features of the picoeukaryotic scaffolds retrieved from the SSD
| Number of scaffolds | Average length* (bp) | Length* of largest scaffold (Kbp) | Average distance between gap (bp) | Average AT content (%) (minimum-maximum) | |
|---|---|---|---|---|---|
| All SSD | 232,141 | 2,165 | 205.9 | 920 | 61.4 (16.4-99.2) |
| 16S rRNA | 558 | 3,942 | 76.1 | 1,103 | 59.9 (38.6-74.7) |
| 18S rRNA | 38 | 2,673 | 24.3 | 1,028 | 51.9 (32.5-71.1) |
| 28S rRNA | 41 | 1,760 | 4.3 | 880 | 50.5 (34.7-66.7) |
| EF1a | 11 | 11,301 | 86.6 | 1,518 | 46 (33.7-67.2) |
| EF2 | 4 | 4,163 | 8.8 | 1,342 | 41.6 (38.5-44.6) |
| RPB1 | 30 | 1,724 | 2.7 | 862 | 61.9 (34.9-76.7) |
| actin | 12 | 2,844 | 17.2 | 910 | 41.5 (30.1-60.3) |
| α-tubulin | 13 | 1,986 | 6.7 | 864 | 48.6 (31.3-73.7) |
| β-tubulin | 15 | 1,887 | 6.7 | 832 | 46.2 (30.5-73.7) |
| All nuclear | 128 | 2,910 | 86.6 | 1,253 | 51.4 (30.1-76.7) |
| cox1 | 11 | 3,962 | 19.4 | 1,230 | 66.3 (58.6-70.5) |
| rbcL | 4 | 4,173 | 11.3 | 2,033 | 64.7 (59.4-67.6) |
*Excluding gaps.