Table 8.
List of species names and their abbreviations
| Species name | Abbreviation used | NCBI number |
|---|---|---|
| Aeropyrum pernix | Ape-1 | Q9Y8T5 |
| Aeropyrum pernix | Ape-2 | Q9Y9H2 |
| Aquifex aeolicus | Aae | O67409 |
| Arabidopsis thaliana | Ath-1 | P14671 |
| Arabidopsis thaliana | Ath-2 | BAB10143 |
| Archaeoglobus fulgidus | Afu-1 | O28672 |
| Archaeoglobus fulgidus | Afu-2 | O29028 |
| Bordetella pertussis | Bpe | NP_882102 |
| Campylobacter jejuni | Cje | CAL34499 |
| Pelagibacter ubique (Candidatus) HTCC1062 | Ple | YP_265913 |
| Chlamydia psittaci | Cps | Q822W9 |
| Chlorobium tepidum | Cte | Q8KF11 |
| Corynebacterium diphtheriae | Cdip-1 | NP_940652 |
| Corynebacterium diphtheriae | Cdip-2 | NP_940660 |
| Escherichia coli | Eco | P0A879 |
| Geobacter sulfurreducens | Gsu | AAT73768 |
| Haemophilus influenzae | Hin | P43760 |
| Lactococcus lactis | Lla | Q01998 |
| Legionella pneumophila | Lpn | CAH15507 |
| Mesorhizobium loti | Mlo | NP_105798 |
| Methanobacterium thermoautotrophicum | Mth-1 | O27696 |
| Methanobacterium thermoautotrophicum | Mth-2 | O27520 |
| Methanococcus jannaschii | Mja | Q60179 |
| Methanosarcina barkeri | Mba | AAZ72487 |
| Mycobacterium bovis | Mbo | NP_855291 |
| Mycobacterium tuberculosis | Mtu | P66984 |
| Neisseria gonorrhoeae | Ngo | Q84GJ9 |
| Neisseria meningitides | Nme | AAF41116 |
| Pyrobaculum aerophilum | Paero | Q8ZV44 |
| Pyrococcus abyssi | Pab-2 | Q9V150 |
| Pyrococcus furiosus | Pfu-2 | Q8U0J5 |
| Pyrococcus horikoshii | Pho | NP_143439 |
| Rhodopseudomonas palustris | Rpa-1 | YP_779393 |
| Salmonella typhimurium | Sty | NP_460685 |
| Staphylococcus aureus | Sau | BAB42464 |
| Streptococcus mutans | Smu | NP_720974 |
| Sulfolobus solfataricus | Sso-1 | P50383 |
| Sulfolobus solfataricus | Sso-2 | AAK41396 |
| Thermomonospora fusca | Tfu | YP_289226 |
| Thermoplasma acidophilum | Tac | Q9HKD2 |
| Thermoplasma volcanium | Tvo | NP_111450 |
| Thermotoga maritime | Tma | Q9WZ09 |
| Xylella fastidiosa | Xfa | C82688 |
| Zea mays | Zma-1 | P43284 |
| Zea mays | Zma-2 | P43283 |