Table 1.

Parameters used to generate 54 simulated data combinations of 1000 genes each

Simulated microarray data
Dataset	AUC0	# DE
A	0.60	100
B	0.75	100
C	0.91	100
D	0.62	200
E	0.75	200
F	0.91	200
Simulated biological knowledge
Knowledge	β	RC
1	0.50	0.91
2	1.00	0.91
3	1.64	0.91
4	0.50	2.27
5	1.00	2.27
6	1.64	2.27
7	0.50	4.55
8	1.00	4.55
9	1.64	4.55