TABLE 2.
α-Helix population (%)
|
Relative to WT
|
|||
---|---|---|---|---|
Peptide | Lys-4 | Lys-9 | Lys-4 | Lys-9 |
From MD simulations at 300 K | ||||
WT | 83 ± 18 | 93 ± 6 | 0 | 0 |
DIM4 | 91 ± 6 | 93 ± 18 | 8 | 0 |
DIM9 | 95 ± 5 | 86 ± 18 | 12 | –7 |
dDIM | 63 ± 25 | 55 ± 38 | –20 | –38 |
ACK | 88 ± 15 | 68 ± 39 | 5 | –25 |
From REMD simulations at 306 K | ||||
WT | 97 ± 2 | 95 ± 3 | 0 | 0 |
DIM4 | 96 ± 3 | 97 ± 3 | –1 | 2 |
DIM9 | 95 ± 2 | 85 ± 6 | –2 | –10 |
dDIM | 71 ± 11 | 50 ± 18 | –26 | –45 |
ACK | 90 ± 9 | 68 ± 9 | –7 | –27 |