Table 3.
Position-specific sequence variation scores for TE-derived, non-repetitive, matrix-random and genome-random TFBS.
| Matrix1 | Protein binding factor2 | TE-derived | non-repetitive | matrix-rand | genome-rand | repeat-rand |
| M00671 | T-cell-specific transcription factor 4 (TCF-4 or TCF7L2) | 4.25 | 5.69 ± 0.51 | 5.80 ± 0.73 | -48.76 ± 15.61 | -48.63 ± 14.97 |
| M00761 | p53 (TP53) | 5.97 | 6.65 ± 1.26 | 5.52 ± 1.92 | -2.79 ± 3.02 | -4.71 ± 3.35 |
| M00789 | GATA binding proteins (GATA) | 6.12 | 5.26 ± 1.56 | 5.27 ± 1.46 | -5.87 ± 2.71 | -4.70 ± 3.15 |
| M00962 | Androgen receptor (AR) | 3.72 | 4.45 ± 1.21 | 4.33 ± 1.74 | -2.29 ± 1.28 | -1.80 ± 2.17 |
| M01037 | Glioma-associated oncogene homolog 1 (GLI1) | 9.34 | 9.12 ± 1.14 | 9.24 ± 1.70 | 1.77 ± 2.83 | -4.28 ± 2.91 |
Average TFBS scores are shown for each category of sites.
1The TRANSFAC database matrix identifier
2The colloquial name of the protein that binds the TFBS along with its official HUGO name in parentheses