Table 3.
Summary of BAC sequencing
| Sample | Clones with identified or sequenced breakpoints | Total number of identified/sequenced breakpoints | Intragenic rearrangements | Gene:intergenic fusions | Gene:gene fusions | Intergenic: intergenic fusions |
|---|---|---|---|---|---|---|
| MCF7 | 12 | 36/35 | 3 | 10 | 19 | 4 |
| BT474 | 6 | 15/6 | 3 | 2 | 10 | 0 |
| SKBR3 | 8 | 24/8 | 7 | 4 | 12 | 1 |
| Breast (2B421) | 3 | 3/3 | 0 | 0 | 3 | 0 |
| Breast (CH514) | 0 | - | - | - | - | - |
| Ovary | 4 | 4/4 | 0 | 0 | 4 | 0 |
| Prostate | 5 | 5/5 | 0 | 4 | 1 | 0 |
| Brain | 3 | 3/3 | 0 | 3 | 0 | 0 |
Breakpoints are indicated as sequenced if the nucleotide sequence was obtained, or identified if the breakpoint was localized to 3-kilobase subclones. BAC, bacterial artifical chromosome.