Table II.
List of genes preferentially expressed in both tomato fruit and stem epidermal tissues, classified by putative functional categories
| Identifier | Annotationa | Pathway |
|---|---|---|
| TC172800 | Flavonol synthase/flavanone 3-hydroxylase (FLS) | Phenylpropanoid/flavonoid metabolism |
| TC176277 | Flavonoid 3-glucosyl transferase (3GT) | Phenylpropanoid/flavonoid metabolism |
| BT014024 | Anthocyanidin-3-glucoside rhamnosyltransferase | Phenylpropanoid/flavonoid metabolism |
| BG631837 | 4-Coumarate-CoA ligase 2 (4CL2) | Phenylpropanoid/flavonoid metabolism |
| TC178705 | Putative chalcone isomerase 4 | Phenylpropanoid/flavonoid metabolism |
| TC182590 | Putative chalcone-flavanone isomerase | Phenylpropanoid/flavonoid metabolism |
| TC170658 | Putative chalcone synthase 1B | Phenylpropanoid/flavonoid metabolism |
| TC174873 | Putative HTH | Wax/cutin |
| TC173809 | Enoyl-CoA reductase (AtCER10) | Wax/cutin |
| TC172551 | 3-Ketoacyl-CoA synthase (SlCER6/AtKCS6/AtCUT1) | Wax/cutin |
| TC182303 | Glycerol-3-P dehydrogenase | Wax/cutin |
| BT013894 | Acyl-CoA synthetase (ACS) | Fatty acid metabolism (putative wax/cutin)b |
| BG628343 | GDSL motif lipase | Fatty acid metabolism (putative wax/cutin)b |
| TC170046 | Lipoxygenase | Fatty acid metabolism (putative wax/cutin)b |
| BT012874 | GSDL motif lipase | Fatty acid metabolism (putative wax/cutin)b |
| TC179801 | MATE efflux family protein | Transporter activity |
| TC174622 | α/β-fold family protein | Aromatic compound metabolism |
| TC170338 | Pathogenesis-related protein | Defense response |
| TC177645 | Responsive to desiccation (RD22) | Response to stress/defense |
| TC169946 | α-Galactosidase (SlαGal) | Cell wall |
| TC176590 | Putative 1-deoxy-d-xylulose-5-P synthase 2 | Isoprenoid pathway |
| TC170338 | Pathogenesis-related protein | Response to stress/defense |
| BT013457 | Putative squamosa promoter-binding protein | Transcription factor activity |
| TC175108 | Unknown | – |
| TC172043 | Unknown | – |
| BG630651 | Unknown | – |
| TC175399 | Cytochrome P450 family protein | – |
a
In most cases, annotation is based on the studied closest homolog/ortholog from other species.
b
Transcripts included in the fatty acid metabolism category are homologs/orthologs of genes that were suggested/predicted but not shown to be involved in wax/cutin metabolism.