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. 2004 Nov 30;91(12):2056–2062. doi: 10.1038/sj.bjc.6602253

Table 1. Chromosome locations of MS and SNP loci analysed on 3p and the frequency of allelic loss (FAL) in 83 cancers.

            FAL
Name Type XY Chromosome location (nucelotides from 3pter) Region Chromosome band Primer pool MS SNP
rs718558 GA 1469483 D3S1297, near CNTN6, contactin 6 3p26.3   2  
D3S1297   1913402 LOC391505, similar to 60S ribosomal protein L21 3p26.3 T 17  
Rs1024147 GT 2709207 D3S1297, near CNTN4, contactin 4 3p26.3     18
Rs2012053 CG 2941128 D3S1297, near CNTN4, contactin 4 3p26.2     15
D3S1304   6794241 MRPS, 36P1, mitochondria ribosomal protein S36 pseudogene 3p26.1 A 12  
D3S1286   15694136 KIAA0379 KIAA0379 protein 3p25.1 T 5  
Rs721624 GA 21625656 D3S1293, FLJ22419, hypothetical protein 3p24.3     5
D3S1293   21802013 FLJ22419, hypothetical FLJ22419 protein 3p24.3 F 2  
D3S1266   27832335 Near EOMES eomesdermin homolog (Xenopus laevis) 3p24.1 D 23  
Rs934328 CT 30682709 TGFBR2 TGFB receptor 2 3p24.1     0
Rs877572 CG 30701397 TGFBR2 TGFB receptor 2 3p24.1     18
D3S1211   31041792 Near LOC339896 hypothetical protein 3p24.1 T 17  
D3S1611   36929105 (MLH1 intron 12) Near MLH1 (60k) 3p22.3 F 32  
Rs928813 GT 38489162 D3S1611, ACVR2B, RNA binding motif, s/s interacting protein 3p22.2     15
Rs1005678 CG 50169301 Near 101F6, RASSF1A, putative tumour suppressor genes, in SEMA3F, semaphorin 3F 3p21.31     32
D3S1582   54552995 CACNA2D3 Calcium channel voltage dep. a2d3 subunit 3p14.3 C 3  
Rs566884 CT 54699343 D3S1582, CACNA2D3, calcium channel voltage-dependant a2d3 subunit 3p14.3     5
Rs492234 CG 59714807 (FHIT intron 8) FHIT Intron 8 3p14.2     13
Rs931322 GA 59883591 (FHIT intron 7) FHIT Intron 7 3p14.2     17
Rs722070 GA 60069630 (FHIT intron 5) FHIT Intron 5 3p14.2     26
D3S1300   60367241 (FHIT intron 5) FHIT Intron 5; near NPCR NPC-related protein 3p14.2 C 27  
Rs2301156 GT 60515020 (FHIT intron 4) FHIT Intron 4 3p14.2     28
Rs1562522 GA 60891272 (FHIT intron 3) FHIT Intron 3 3p14.2     26
Rs1001788 CT 61129144 (FHIT intron 2) FHIT Intron 2 3p14.2     0
D3S1261   68535327 Near LOC151645 prosome, macropain 26S subunit 3p14.1 D 16  
D3S1566   70132371 LOC391543 similar to KIAA1839 protein 3p13 D 8  
D3S1284   72824320 Near LOC317753 proteasome 26S non-ATPase subunit 3p13 F 23  
Rs1027833 CT 78584994 LOC51159, ROBO1, roundabout guidance receptor homologue (Drosophila) 3p12.3     8
D3S1595   85991642 LOC253559 nectin-like protein 3 3p12.1 A 18  
Rs1986448 AT 87086700 LOC51159, near POU1F1, POU domain, Pit1, growth hormone factor 1 3p12.1     16