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. 2007 Dec 18;104(52):20731–20736. doi: 10.1073/pnas.0709489104

Table 1.

Energetics (kcal/mol) of formation of various 3a and 3b oligomers from 2-ns molecular dynamics in vacuum

Evdw ΔEvdw Eele ΔEele Evdw+ Eele ΔEvdw+ ΔEele
Monomer
3a 6 ± 3 −310 ± 4 −304
3b 7 ± 4 −646 ± 8 −639
Dimer. No. of edge interfaces = 1; stacked interfaces = 1
3a B 11 ± 2 −1 −626 ± 4 −6 −615 −7
3a A 9 ± 2 −3 −624 ± 4 −4 −615 −7
3a S −29 ± 4 −41 −618 ± 6 2 −647 −39
3b B 9 ± 3 −5 −1,305 ± 7 −13 −1,296 −18
3b S −16 ± 6 −30 −1,294 ± 12 −2 −1,310 −32
Trimer. No. of edge interfaces = 3; stacked interfaces = 2
3a B 16 ± 6 −2 −958 ± 9 −28 −942 −30
3a A 12 ± 6 −6 −950 ± 9 −20 −938 −26
3a S −66 ± 5 −84 −928 ± 7 2 −994 −82
3b B 12 ± 4 −9 −1,981 ± 8 −43 −1,969 −52
3b S −40 ± 7 −61 −1,943 ± 15 −5 −1,983 −66
Tetramer. No. of edge interfaces = 5; stacked interfaces = 3
3a B 21 ± 7 −3 −1,292 ± 10 −52 −1,271 −55
3a A 15 ± 7 −9 −1,278 ± 10 −38 −1,263 −47
3a S −104 ± 6 −128 −1,239 ± 8 1 −1,343 −127
3b B 18 ± 8 −10 −2,652 ± 17 −68 −2,634 −78
3b S −64 ± 9 −92 −2,593 ± 10 −9 −2,657 −101
Hexamer. No. of edge interfaces = 10; stacked interfaces = 5
3a B 30 ± 9 −6 −1,973 ± 13 −113 −1,943 −119
3a A 18 ± 8 −18 −1,948 ± 13 −88 −1,930 −106
3a S −181 ± 8 −217 −1,861 ± 10 −1 −2,042 −218
3b B 24 ± 10 −18 −4,014 ± 21 −138 −3,990 −156
3b S −112 ± 11 −154 −3,892 ± 23 −16 −4,004 −170
Dodecamer. No. of edge interfaces = 30; stacked interfaces = 11
3a B 55 ± 14 −17 −4,087 ± 20 −367 −4,032 −384
3a A 21 ± 13 −51 −4,018 ± 20 −298 −3,997 −349
3a S −410 ± 11 −482 −3,727 ± 15 −7 −4,137 −489
3b B 35 ± 15 −49 −8,171 ± 31 −419 −8,136 −468
3b S −257 ± 16 −341 −7,793 ± 34 −41 −8,050 −382

Evdw, van der Waals energy; Eele, electrostatic energy; multimer interactions A, B, and S, edge mode A, B, and stacked, respectively.