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. 2008 May 21;50(1):10. doi: 10.1186/1751-0147-50-10

Table 2.

Campylobacter spp. strains for which the 16S rRNA sequences were retrieved from RDP-II or GenBank and used in the phylogenetic analysis

Species Strain Acc no in GenBank Acc no to an identical seq No of Ns4 in the seq Identical to Seq type
C. coli LMG 6440 AF372092
C. coli LMG 9220 AF550620
C. coli LMG 15883 AF550621
C. coli LMG 15884 AF550622
C. coli H99/155 AF550624
C. coli B99/131 AF550625
C. coli ATCC 49941 AY621115
C. coli NZ1905-94 DQ174136
C. coli NZ2695-96 DQ174137
C. coli CCUG 11283 L04312 10
C. coli RMIT32A L19738 12
C. coli H99/119 AF550623 e
C. coli Lio8 DQ1741353 AF550623 e
C. coli NZ899-00 DQ1741383 AF550623 e
C. coli NZ900-95 DQ1741393 AF550623 e
C. coli NZ4812-94 DQ1741403 AF550623 e
C. jejuni RM12212 CP000025 e
C. jejuni 98/E600/5 AF3932023 RM1221 e
C. jejuni 98/E599/10 AF3932033 RM1221 e
C. jejuni LMG9217 AF5506263 RM1221 e
C. jejuni CCUG 10937 DQ1741413 RM1221 e
C. jejuni NCTC 11351 AF372091
C. jejuni CCUG 11284 L04315 9
C. jejuni WH11 AF3932043 L04315 d
C. jejuni BB/224 AF5506293 L04315 d
C. jejuni LMG 9243 AF550627
C. jejuni H99/240 AF550628
C. jejuni TGH9011 Z29326
C. jejuni SSI 5384-98 Y19244
C. jejuni NCTC 111681,2 AL111168
C. jejuni 6871 AY628389
C. jejuni 81–1762 CP000538 i
C. jejuni ATCC 294228 DQ174142 h
C. jejuni B99/206 AF5506303 DQ174142 h
C. jejuni Lio6 DQ174143 b
C. jejuni ATCC 49943 AY6211123 DQ174143 b
C. jejuni CCUG 24567 L146303 DQ174144
C. doylei LMG8843 DQ174144
C. doylei Not defined AY6211113 DQ174143
C. lari Not defined L04316 6
C. upsaliensis Not defined L14628 11

1 Strain for which the whole genome sequence is available.

2 The sequence without deletions was used in the tree.

3 This sequence was not used in the tree (Fig. 2), because it was identical to another sequence.

4 Number of ambiguities in the sequence, which also reflects the sequencing accuracy.